Table 5 Dinucleotide step parameters values for RY steps in RNA helices
Step | Dataset (n) | Tilt | Roll | Twist | Shift | Slide | Rise | Prop.av | Cup | Zp |
|---|---|---|---|---|---|---|---|---|---|---|
AC/GU | free-RNA | 0.6 | 6.0 | 31.8 | 0.2 | -1.3 | 3.2 | -13.4 | 6.0 | 2.2 |
| Â | (96) | (1.9) | (3.4) | (2.8) | (0.5) | (0.3) | (0.1) | (4.9) | (6.3) | (0.2) |
| Â | non-cont | 0.9 | 5.3 | 31.5 | 0.2 | -1.3 | 3.2 | -12.2 | 7.3 | 2.2 |
(76) | (2.4) | (4.9) | (3.0) | (0.5) | (0.5) | (0.1) | (6.0) | (8.1) | (0.4) | |
| Â | cont | 0.6 | 4.5 | 31.9 | 0.2 | -1.4 | 3.2 | -10.3 | 7.6 | 2.3 |
(143) | (2.4) | (4.6) | (3.1) | (0.5) | (0.5) | (0.1) | (5.7) | (9.7) | (0.4) | |
AU/AU | free-RNA | 0.3 | 10.2 | 31.0 | 0.1 | -1.1 | 3.2 | -17.4 | 4.0 | 1.9 |
| Â | (20) | (0.9) | (4.6) | (2.1) | (0.2) | (0.3) | (0.1) | (3.9) | (7.0) | (0.2) |
| Â | non-cont | -0.3 | 9.7 | 32.5 | -0.0 | -1.2 | 3.2 | -13.8 | 8.8 | 2.0 |
(18) | (2.8) | (7.8) | (2.9) | (0.4) | (0.3) | (0.1) | (4.3) | (11.1) | (0.3) | |
| Â | cont | -0.2 | 6.6 | 31.9 | 0.0 | -1.3 | 3.2 | -12.4 | 5.1 | 2.2 |
(38) | (1.8) | (5.0) | (2.7) | (0.4) | (0.5) | (0.1) | (5.3) | (6.2) | (0.3) | |
GC/GC | free-RNA | 0.1 | 3.9 | 31.2 | 0.0 | -1.5 | 3.2 | -10.8 | 7.3 | 2.4 |
| Â | (94) | (1.8) | (3.3) | (2.9) | (0.5) | (0.4) | (0.1) | (4.5) | (5.5) | (0.2) |
| Â | non-cont | 0.0 | 3.6 | 31.7 | -0.2 | -1.5 | 3.2 | -9.0 | 6.9 | 2.4 |
(100) | (2.2) | (5.0) | (3.0) | (0.5) | (0.5) | (0.1) | (5.7) | (8.5) | (0.4) | |
| Â | cont | -0.2 | 3.2 | 31.6 | -0.2 | -1.6 | 3.2 | -8.2 | 5.6 | 2.5 |
(174) | (2.4) | (4.2) | (3.2) | (0.5) | (0.5) | (0.1) | (6.2) | (8.9) | (0.3) | |
RY | free-RNA | 0.3 | 5.5 | 31.4 | 0.1 | -1.4 | 3.2 | -12.6 | 6.4 | 2.2 |
| Â | (210) | (1.8) | (3.9) | (2.8) | (0.5) | (0.4) | (0.1) | (5.0) | (6.1) | (0.3) |
| Â | non-cont | 0.3 | 4.8 | 31.7 | 0.1 | -1.4 | 3.2 | -10.7 | 7.2 | 2.3 |
(194) | (2.4) | (5.5) | (3.0) | (0.5) | (0.5) | (0.1) | (6.0) | (8.6) | (0.4) | |
| Â | cont | 0.1 | 4.1 | 31.8 | 0.0 | -1.5 | 3.2 | -9.5 | 6.3 | 2.4 |
(355) | (2.4) | (4.6) | (3.1) | (0.5) | (0.5) | (0.1) | (6.1) | (9.0) | (0.4) | |
ModelRNA | Â | -0.4 | 13.1 | 30.0 | 0.0 | -1.2 | 3.3 | -10.4 | 0.0 | 2.2 |