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Figure 2 | BMC Research Notes

Figure 2

From: Comparison of insertion/deletion calling algorithms on human next-generation sequencing data

Figure 2

Concordance of indels called by Pindel, GATK-HC and GATK-UG in targeted exon capture (A), whole exome sequencing (B), and whole genome sequencing (C) data sets without adjustment to software parameters. Concordance was low in the intersection of the three tools across all targets. UnifiedGenotyper and HaplotypeCaller had higher concordance of calls, but did not detect many of the indels called by Pindel in TES and WES.

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