Table 2 Compact overview of the datasets
From: Next generation sequencing reads comparison with an alignment-free distance
Datasets | |||
|---|---|---|---|
Yeast | E. coli | Human | |
Genome length | 12.1 Mb | 4.6 Mb | 3.2 Gb |
Sequencing machine | Illumina HiSeq | Roche 454 | Illumina GA II |
Database | NCBI SRA | CGU | NCBI SRA |
Accession number | ERX191563 | - | SRX013970 |
Run id | ERR216898 | - | SRR031057 |
Number of downloaded reads ( N ) | 3,551,079 | 436,142 | 14,267,012 |
Avg. reads length ± st.dev | 100 ±6 | 235 ±4 | 75 ±5 |
Total base pairs | 355.0 M | 102.5 M | 1.1 G |
Random selection of aligned reads ( rs ) | 54,860 | 100,000 | 183,672 |
Total number of selected reads ( rtot ) | 109,720 | 200,000 | 367,344 |
Read pairs in each subset rp | 1 M | 200,000 | 1 M |
Source chromosome | chr1 | - | chr1 |