From: Next generation sequencing reads comparison with an alignment-free distance
Reads pairs | 1.00 E+4 | 1.00 E+6 | 1.00 E+8 | ||||||
---|---|---|---|---|---|---|---|---|---|
Time [sec] | User | System | Elapsed | User | System | Elapsed | User | System | Elapsed |
AF | 2.09 | 0.44 | 1.95 | 91.42 | 36.89 | 126.96 | 10230.33 | 3530.08 | 13541.00 |
NW | 11.98 | 0.42 | 11.74 | 1466.49 | 34.03 | 1501.03 | 362794.34 | 3686.95 | 365785.00 |
Blast | 122.21 | 81.14 | 199.80 | 10203.07 | 7434.90 | 18747.00 | 1418254.45 | 946049.60 | 2365124.00 |