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Table 2 Expression of Chr3 genes near the Sry transgene

From: Four Core Genotypes mouse model: localization of the Sry transgene and bioassay for testicular hormone levels

  FCG WT Distance
Probe ANOVA FDR MF ANOVA FDR MF (bp)
Lxn 0.001 0.035 -0.08 0.549 0.998 0.02 -3215751
Rarres1 0.868 0.963 -0.01 0.678 0.999 -0.02 -3194863
Mfsd1 0.187 0.530 -0.04 0.339 0.951 -0.05 -3090981
Schip1 0.033 0.225 -0.04 0.806 0.999 -0.01 -2608947
Schip1 0.568 0.837 -0.01 0.615 0.999   -2608947
Il12a 0.310 0.656 -0.01 0.598 0.999 0.01 -1983105
Trim59 0.021 0.179 -0.09 0.160 0.832 0.03 -1638461
Trim59 0.950 0.985 0.00 0.623 0.999 0.02 -1638461
Kpna4 0.868 0.963 0.00 0.760 0.999 -0.01 -1606600
Ppm1l 0.034 0.230 0.08 0.002 0.417 0.06 -1356888
Nmd3 0.085 0.362 0.07 0.083 0.734 0.10 -951764
Sry transgene        0
Slitrk3 0.346 0.684 -0.02 0.728 0.999 0.02 2374377
Bche 0.060 0.306 0.10 0.931 0.999 -0.01 2962059
Serpini2 0.676 0.890 0.01 0.942 0.999 0.00 4568621
Pdcd10 0.231 0.580 0.03 0.308 0.938 0.04 4842741
Pdcd10 0.336 0.677 0.02 0.278 0.926 0.04 4842741
Serpini1 0.130 0.447 0.01 0.509 0.993 -0.02 4883798
Fstl5 0.917 0.978 0.00 0.831 0.999 0.01 5400521
Rapgef2 0.900 0.973 0.00 0.319 0.946 0.03 8388767
Ppid 0.002 0.056 0.14 0.674 0.999 0.02 8917593
Etfdh 0.024 0.191 0.09 0.987 0.999 0.00 8930039
4930579G24Rik 0.658 0.880 0.02 0.118 0.776 -0.07 8955330
  1. The table shows ANOVA and False Discovery Rate (FDR) p-values of Sry effects on gene expression in liver of FCG mice (effect of Sry transgene) and of WT mice (effect of endogenous Sry). For several genes, p values for two different probes for the same gene are shown. MF is fractional mean difference between males (M, with Sry) and females (F, without Sry). For example, -0.08 means that F had about 8% higher expression than M. Distance is relative to the Sry transgene in FCG mice.
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