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Figure 3 | BMC Research Notes

Figure 3

From: In silico analysis of the polygalacturonase inhibiting protein 1 from apple, Malus domestica

Figure 3

A phylogenetic tree representing the hierarchical clustering of the pairwise similarities between polygalacturonase inhibiting proteins (PGIPs). The tree was constructed using the unweighted pair group method with arithmetic mean (UPGMA) and bootstrapping was also performed to verify the accuracy of the pairwise similarities identified. Triticum aestivum2 (TaPGIP2; AM180657), T. aestivum1 (TaPGIP1; AM180656), Malus pumila (MpPGIP; JQ001783), M. domestica PGIP (MdPGIP; U77041), M. hupehensis (MhPGIP; FJ449708), Pyrus communis PGIP (PcPGIP; L09264), Eucalyptus grandis (EgPGIP, AY445043), E. camaldulensis (EcPGIP; AF159168), E. urophylla (EuPGIP; AF159169), E. saligna (EsPGIP; AF159170), E. nitens (EnPGIP; AF159171), Prunus mahaleb (PmPGIP; AF263465), P. americana (PaPGIP; AY883418), Fragaria ananassa (FaPGIP; EU117215), Citrus unshiu (CuPGIP; AB016204), C. jambhiriB (CjPGIPB, AB015198), C. iyo (CiPGIP, AB016205), Fortunella margarita (FmPGIP; AB020529), C. jambhiriA (CjPGIPA, AB013397), C. hystrix (ChPGIP; AB071018), Poncirus trifoliata (PtPGIP, AB050528), Vitis vinifera1 (VvPGIP1; AF499451), V. thunbergii (VtPGIP; EU037367), Gossypium hirsutum (GhPGIP; EU711352), Cucumis melo (CmPGIP; KC215471), Solanum brevidens2 (SbPGIP2; DQ185391), S. brevidens1-2 (SbPGIP1-2; DQ185393), S. brevidens3 (SbPGIP3; DQ185392), S. tuberosum1 (StPGIP1; AY662681), S. torvum (StPGIP, FJ943498), S. lycopersicum (SlPGIP; L26529), Daucus carota (DcPGIP; AF055480), Capsicum annuum (CaPGIP; EU560898), Phaseolus vulgaris2 (PvPGIP2, AJ864507), P. vulgaris1 (PvPGIP1; X64769), Pisum sativum (PsPGIP; AJ749705) and Glycine max (GmPGIP; X78274).

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