Skip to main content

Advertisement

Table 3 Overview of TF annotation data

From: A property-based analysis of human transcription factors

Information Type TFs with data Positives* Average**
Uniprot ID protein ID 1978 1978 1
Pfam non-DBD domain IDs 1978 753 2.16
Pfam DBD domain IDs 1978 1225 1.33
PPI protein IDs 1222 482 1.58
PTM - acetylation positions 1978 884 3.55
PTM - methylation positions 1978 376 3.22
PTM - O-GlcNAc positions 1978 41 2.90
PTM - phosphorylation positions 1978 1797 13.12
PTM - sumoylation positions 1978 190 1.77
PTM - ubiquitination positions 1978 896 4.38
  1. *Number of TFs that actually have the property. **Average number of occurrences in the positive TFs.