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Table 1 Target DNA fragment sizes and number of sites that can be methyalted by HhaI, HpaII, or SssI methylase

From: Sensitivity and specificity of immunoprecipitation of DNA containing 5-Methylcytosine

MseI fragment size qPCR probe/primer set # HhaI sites # HpaII sites # CpG sites
412 LTR1 1 0 21
LTR3 1 0 21
666 Luc1 3 4 37
185 Luc2 0 1 7
428 Luc3 1 2 30
1720 Hyg5 10 10 143
365 PBR 1 2 23