Table 1 Target DNA fragment sizes and number of sites that can be methyalted by HhaI, HpaII, or SssI methylase
From: Sensitivity and specificity of immunoprecipitation of DNA containing 5-Methylcytosine
MseI fragment size | qPCR probe/primer set | # HhaI sites | # HpaII sites | # CpG sites |
|---|---|---|---|---|
412 | LTR1 | 1 | 0 | 21 |
LTR3 | 1 | 0 | 21 | |
666 | Luc1 | 3 | 4 | 37 |
185 | Luc2 | 0 | 1 | 7 |
428 | Luc3 | 1 | 2 | 30 |
1720 | Hyg5 | 10 | 10 | 143 |
365 | PBR | 1 | 2 | 23 |