Gene | Map position | Number of SNPs that differ between the A/J and C57BL/6J inbred strains | |||||
---|---|---|---|---|---|---|---|
Coding-non-synonymous | Coding-synonymous | mRNA-UTR | Intron | Locus-region | |||
Chromosome ( genome coordinates , bp) | |||||||
Ahr | 12 | (35,497,974 – 35,535,038) | 7 | 8 | 8 | 49 | - |
Arntl | 7 | (113,207,465 – 113,314,122) | - | 2 | 2 | 58 | - |
Cipc | 12 | (86,947,043 – 86,965,362) | - | - | - | - | - |
Clock | 5 | (76,212,177 – 76,304,548) | - | - | 1 | 8 | - |
Cry1 | 10 | (85,131,702 – 85,185,054) | - | - | - | 2 | - |
Cry2 | 2 | (92,403,646 – 92,434,043) | - | 2 | 6 | 48 | 1 |
Csnk1e | 15 | (79,417,856 – 79,443,919) | - | 1 | 16 | 1 | 1 |
Csnk1d | 11 | (120,961,749 – 120,991,330) | - | - | - | - | - |
Npas2 | 1 | (39,193,731 – 39,363,234) | 1 | 2 | - | 114 | - |
Nr1d1 | 11 | (98,767,932 – 98,775,333) | - | - | - | - | - |
Nr1d12 | 14 | (18,204,054 – 18,239,127) | - | - | 1 | 1 | - |
Per1 | 11 | (69,095,217 – 69,109,960) | - | - | - | - | - |
Per2 | 1 | (91,415,982 – 91,459,324) | - | 4 | 6 | 28 | - |
Per3 | 4 | (151,003,652 – 151,044,665) | - | - | - | 1 | - |
Rora | 9 | (68,653,786 – 69,388,246) | - | 1 | - | 605 | - |
Rorb | 19 | (18,930,605 – 19,111,196) | - | - | 1 | 11 | - |
Rorc | 3 | (94,372,794 – 94,398,276) | - | 10 | - | - | - |
Timeless | 10 | (128,232,065 – 128,252,941) | - | - | 1 | 11 | - |
Usf1 | 1 | (171,411,313 – 171,419,142) | - | 3 | 8 | 37 | 3 |