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Table 6 SNPs for mouse circadian clock and clock-related genes a

From: Chromosomal assignment of quantitative trait loci influencing baseline circulating total cholesterol level in male laboratory mice: report of a consomic strain survey and comparison with published results

Gene

Map position

Number of SNPs that differ between the A/J and C57BL/6J inbred strains

Coding-non-synonymous

Coding-synonymous

mRNA-UTR

Intron

Locus-region

Chromosome ( genome coordinates , bp)

Ahr

12

(35,497,974 – 35,535,038)

7

8

8

49

-

Arntl

7

(113,207,465 – 113,314,122)

-

2

2

58

-

Cipc

12

(86,947,043 – 86,965,362)

-

-

-

-

-

Clock

5

(76,212,177 – 76,304,548)

-

-

1

8

-

Cry1

10

(85,131,702 – 85,185,054)

-

-

-

2

-

Cry2

2

(92,403,646 – 92,434,043)

-

2

6

48

1

Csnk1e

15

(79,417,856 – 79,443,919)

-

1

16

1

1

Csnk1d

11

(120,961,749 – 120,991,330)

-

-

-

-

-

Npas2

1

(39,193,731 – 39,363,234)

1

2

-

114

-

Nr1d1

11

(98,767,932 – 98,775,333)

-

-

-

-

-

Nr1d12

14

(18,204,054 – 18,239,127)

-

-

1

1

-

Per1

11

(69,095,217 – 69,109,960)

-

-

-

-

-

Per2

1

(91,415,982 – 91,459,324)

-

4

6

28

-

Per3

4

(151,003,652 – 151,044,665)

-

-

-

1

-

Rora

9

(68,653,786 – 69,388,246)

-

1

-

605

-

Rorb

19

(18,930,605 – 19,111,196)

-

-

1

11

-

Rorc

3

(94,372,794 – 94,398,276)

-

10

-

-

-

Timeless

10

(128,232,065 – 128,252,941)

-

-

1

11

-

Usf1

1

(171,411,313 – 171,419,142)

-

3

8

37

3

  1. aMap position and SNPs were retrieved from the Mouse Genome Database (MGD, http://www.informatics.jax.org).