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Figure 2 | BMC Research Notes

Figure 2

From: Characterisation and expression analysis of cathepsins and ubiquitin-proteasome genes in gilthead sea bream (Sparus aurata) skeletal muscle

Figure 2

Phylogenetic analysis of gilthead sea bream cathepsins B, D and L. Rooted Maximum Parsimony tree predicting the evolutionary relationship between Sparus aurata (Sa), Danio rerio (Dr), Homo sapiens (Hs), Mus musculus (Mm), Salmo salar (Ss), Takifugu rubripes (Tr) and Xenopus laevis (XI) CTSB, CTSD and CTSL orthologues. The calpain 1 sequence of gilthead sea bream (SaCapn1) [GenBank: KF444899] was used as outgroup. Bootstrap values, calculated from 1000 replicates, are indicated at the nodes. Gilthead sea bream cathepsins are boxed. The NCBI GenBank accession numbers for the analysed sequences are: D. rerio (DrCTSBa: NM_213336; DrCTSBb: NM_001110478; DrCTSD: NM_131710; DrCTSLa: BC066490; DrCTSLb: NM_131198), H. sapiens (HsCTSB: L16510; HsCTSD: NM_001909; HsCTSL: NM_001912), M. musculus (MmCTSB: NM_007798; MmCTSD: NM_009983; MmCTSL: NM_009984), S. salar (SsCTSB; NM_001140522; SsCTSD: BT043515; SsCTSL1: NM_001146546), S. aurata (SaCTSB: KJ524457; SaCTSDa: AF036319; SaCTSDb: KJ524456 and; SaCTSL: DQ875329), T. rubripes (TrCTSBa: XM_003971718; TrCTSBb: XM_003969499; TrCTSD1: AB179548; TrCTSD2: AB179549; TrCTSL: XM_003975074) and X. laevis (XlCTSB: NM_001086101; XlCTSD: AB103479; XlCTSL: NM_001092267).

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