Fig. 1
From: cFinder: definition and quantification of multiple haplotypes in a mixed sample
Workflow for using cFinder. Sequencing data is aligned against a reference sequence by a user defined tool (blue) and result is loaded in sam or ace format (together with optional annotation information) into cFinder, where variant detection is accomplished and optional filtering can be performed. After selection of desired variants clones are automatically calculated and presented for further evaluation