Table 2 Test of simulated data with overlapping amplicons
From: cFinder: definition and quantification of multiple haplotypes in a mixed sample
Test | Clone variants | Default | Infer relationships | ||
|---|---|---|---|---|---|
% | Hits | % | Hits | ||
A | 1 | 23.8 | 5 | – | – |
3 | 23.8 | 5 | – | – | |
1, 3* | 14.3 | 3 | 28.6 | 2 | |
1, 2 | 4.8 | 1 | – | – | |
2 | 4.8 | 1 | – | – | |
2, 3 | 4.8 | 1 | – | – | |
1, 2, 3* | – | – | 14.3 | 1 | |
B | 3* | 43.8 | 21 | 37.5 | 6 |
2* | 37.5 | 18 | 31.3 | 5 | |
2, 3 | 8.3 | 4 | – | – | |
3, 4 | 8.3 | 4 | – | – | |
2, 4 | 8.3 | 4 | – | – | |
4 | 6.3 | 3 | – | – | |
1, 4 | 2.1 | 1 | – | – | |
1, 3 | 2.1 | 1 | – | – | |
1, 2 | 2.1 | 1 | – | – | |
2, 3, 4* | – | – | 18.8 | 3 | |
1, 2, 3, 4* | – | – | 6.3 | 1 | |