Table 2 Transition transversion ratio in different variant calling approaches
From: Challenges in exome analysis by LifeScope and its alternative computational pipelines
Approach | LifeScope | LifeScope-GATK | MAQ-GATK | SHRiMP-GATK | BFAST-GATK |
|---|---|---|---|---|---|
Ti/Tv | 2.62 | 2.45 | 2.59 | 2.3 | 2.68 |