Skip to main content

Table 1 Subset of 137 of the 579 overlapping genes with more than twofold changes in transcript abundance due to either of the treatments

From: Genome-wide analysis of overlapping genes regulated by iron deficiency and phosphate starvation reveals new interactions in Arabidopsis roots

AGI

Annotation

Mean (−Fe/+Fe)

SD

Mean (−Pi/+Pi)

SD

At3G12900

2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

612.44

199.47

0.06

0.10

At4G31940

CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4

184.70

3.63

0.08

0.01

At1G52120

Mannose-binding lectin superfamily protein

157.65

59.83

6.13

2.70

At3G46900

COPT2, copper transporter 2

71.15

33.39

0.40

0.36

At1G01580

ATFRO2, FRD1, FRO2, ferric reduction oxidase 2

59.73

10.56

0.35

0.05

At5G02780

GSTL1, glutathione transferase lambda 1

57.98

10.87

0.69

0.06

At4G19690

ATIRT1, IRT1, iron-regulated transporter 1

54.72

7.88

0.26

0.04

At5G38820

Transmembrane amino acid transporter family protein

54.35

11.69

0.43

0.09

At3G56980

BHLH039, ORG3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein

34.23

13.48

0.73

0.18

At3G13610

2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

10.04

0.65

1.63

0.25

At1G73120

Unknown protein

8.98

2.09

0.28

0.11

At1G73220

1-Oct, AtOCT1, organic cation/carnitine transporter1

7.38

6.18

196.69

139.63

At4G33020

ATZIP9, ZIP9, ZIP metal ion transporter family

7.09

2.01

2.21

0.97

At5G05250

Unknown protein

6.62

0.95

0.57

0.10

At3G61410

BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1)

6.53

1.32

3.79

0.43

At1G74770

Zinc ion binding

6.43

0.50

0.66

0.07

At5G19560

ATROPGEF10, ROPGEF10, ROP uanine nucleotide exchange factor 10

5.33

0.51

2.12

0.20

At2G02310

AtPP2-B6, PP2-B6, phloem protein 2-B6

5.30

2.01

0.49

0.12

At2G33020

AtRLP24, RLP24, receptor like protein 24

5.05

1.74

0.48

0.33

At3G59880

Unknown protein

4.58

2.42

2.51

0.54

At5G01060

Protein kinase protein with tetratricopeptide repeat domain

4.44

0.17

1.70

0.10

At5G04950

ATNAS1, NAS1, nicotianamine synthase 1

4.39

0.50

0.49

0.01

At3G57157

Other RNA

4.28

0.37

9.81

1.46

At3G60330

AHA7, HA7, H(+)-ATPase 7

4.27

0.69

1.79

0.21

At3G21500

DXPS1, 1-deoxy-d-xylulose 5-phosphate synthase 1

3.76

1.94

0.40

0.26

At3G21240

4CL2, AT4CL2, 4-coumarate:CoA ligase 2

3.73

0.16

1.25

0.09

At3G50710

F-box/RNI-like/FBD-like domains-containing protein

3.57

1.09

2.71

1.32

At1G18910

Zinc ion binding

3.33

0.13

0.78

0.04

At5G48657

Defense protein-related

3.33

0.71

1.36

0.23

At1G01380

ETC1, Homeodomain-like superfamily protein

3.22

1.09

3.73

1.22

At1G51680

4CL.1, 4CL1, AT4CL1, 4-coumarate:CoA ligase 1

3.22

0.06

1.27

0.19

At5G54790

Unknown protein

3.20

0.75

2.02

0.19

At2G01880

ATPAP7, PAP7, purple acid phosphatase 7

3.14

0.21

3.31

0.81

At5G19970

Unknown protein

2.81

0.43

0.57

0.07

At5G65500

U-box domain-containing protein kinase family protein

2.73

0.60

6.26

0.42

At4G12735

Unknown protein

2.67

1.20

1.87

0.47

At3G57160

Unknown protein

2.57

0.55

1.46

0.23

At5G26820

ATIREG3, IREG3, IREG3, MAR1, RTS3, iron-regulated protein 3

2.54

0.28

0.77

0.19

At4G30490

AFG1-like ATPase family protein

2.52

0.32

1.40

0.08

At1G78230

Outer arm dynein light chain 1 protein

2.51

0.57

0.59

0.22

At3G18290

BTS, EMB2454, zinc finger protein-related

2.51

0.14

0.76

0.09

At1G51870

Protein kinase family protein

2.42

0.42

2.25

0.83

At5G22555

Unknown protein

2.37

0.58

4.13

2.07

At1G53310

ATPEPC1, ATPPC1, PEPC1, PPC1, phosphoenolpyruvate carboxylase 1

2.34

0.19

2.21

0.25

At3G51570

Disease resistance protein (TIR-NBS-LRR class) family

2.32

0.58

2.70

1.18

At5G22890

C2H2 and C2HC zinc fingers superfamily protein

2.32

0.53

1.91

0.25

At4G22980

Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G51920.1)

2.30

0.28

0.56

0.14

At1G14190

Glucose-methanol-choline (GMC) oxidoreductase family protein

2.29

0.41

0.78

0.08

At1G48300

Unknown protein

2.27

0.25

0.85

0.07

At1G24320

Six-hairpin glycosidases superfamily protein

2.26

0.27

0.78

0.09

At1G62422

Unknown protein

2.25

0.43

1.37

0.10

At4G38950

ATP binding microtubule motor family protein

2.25

0.45

1.50

0.15

At3G47420

ATPS3, PS3, phosphate starvation-induced gene 3

2.24

0.27

12.82

5.53

At5G26320

TRAF-like family protein

2.24

0.26

2.95

0.37

At2G43570

CHI, chitinase, putative

2.22

0.87

2.26

0.45

At4G26890

MAPKKK16, mitogen-activated protein kinase kinase kinase 16

2.16

0.42

3.00

0.85

At5G13910

LEP, Integrase-type DNA-binding superfamily protein

2.14

0.15

1.25

0.16

At5G27920

F-box family protein

2.14

0.15

1.29

0.15

At3G15510

ANAC056, ATNAC2, NAC2, NARS1, NAC domain containing protein 2

2.13

0.62

0.71

0.15

At5G53850

Haloacid dehalogenase-like hydrolase family protein

2.09

0.06

0.96

0.01

At2G18193

P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.07

0.26

1.29

0.01

At2G32960

Phosphotyrosine protein phosphatases superfamily protein

2.07

0.23

4.79

1.23

At1G64590

NAD(P)-binding Rossmann-fold superfamily protein

2.06

0.13

2.39

0.70

At5G48930

HCT, hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase

2.04

0.17

1.16

0.07

At2G14210

AGL44, ANR1, AGAMOUS-like 44

2.01

0.37

0.82

0.09

At5G20790

Unknown protein

0.32

0.13

90.27

24.26

At1G30560

Major facilitator superfamily protein

55.93

32.45

At5G01220

SQD2, sulfoquinovosyldiacylglycerol 2

0.86

0.06

10.49

3.02

At1G72070

Chaperone DnaJ-domain superfamily protein

1.72

0.62

6.60

3.34

At3G52720

ACA1, ATACA1, CAH1, alpha carbonic anhydrase 1

0.40

0.20

5.56

3.11

At1G23140

Calcium-dependent lipid-binding (CaLB domain) family protein

1.58

0.43

5.33

1.19

At3G52190

PHF1, phosphate transporter traffic facilitator1

1.22

0.12

5.25

0.61

At3G56040

UGP3, UDP-glucose pyrophosphorylase 3

0.74

0.18

4.98

0.71

At3G02870

VTC4, Inositol monophosphatase family protein

0.79

0.06

4.64

0.29

At3G16390

NSP3, nitrile specifier protein 3

0.67

0.08

4.55

0.59

At3G07350

Protein of unknown function (DUF506)

0.54

0.07

4.40

0.09

At3G19970

Alpha/beta-hydrolases superfamily protein

1.58

0.08

4.37

0.76

At1G15040

Class I glutamine amidotransferase-like superfamily protein

0.60

0.04

3.73

1.12

At3G12500

ATHCHIB, B-CHI, CHI-B, HCHIB, PR-3, PR3, basic chitinase

0.52

0.05

3.05

0.75

At1G18970

GLP4, germin-like protein 4

0.71

0.12

3.04

0.41

At2G29000

Leucine-rich repeat protein kinase family protein

1.85

0.60

3.03

0.79

At3G53620

AtPPa4, PPa4, pyrophosphorylase 4

0.82

0.03

2.96

0.19

At1G14220

Ribonuclease T2 family protein

0.74

0.18

2.89

0.27

At4G32480

Protein of unknown function (DUF506)

1.35

0.19

2.85

1.36

At3G06962

Other RNA

1.82

0.49

2.74

0.44

At1G11920

Pectin lyase-like superfamily protein

2.68

0.51

At1G08650

ATPPCK1, PPCK1, phosphoenolpyruvate carboxylase kinase 1

1.77

0.16

2.58

0.21

At4G04040

MEE51, Phosphofructokinase family protein

0.83

0.04

2.50

0.22

At5G57540

AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13

1.53

0.11

2.33

0.36

At5G40860

Unknown protein

1.51

0.11

2.32

0.81

At1G68740

PHO1;H1, EXS (ERD1/XPR1/SYG1) family protein

0.39

0.08

2.31

0.44

At3G32040

Terpenoid synthases superfamily protein

1.32

0.21

2.30

0.11

At2G25240

Serine protease inhibitor (SERPIN) family protein

1.53

0.15

2.27

0.08

At2G16430

ATPAP10, PAP10, purple acid phosphatase 10

0.68

0.08

2.26

0.33

At4G30670

Putative membrane lipoprotein

1.61

0.16

2.22

0.17

At3G10420

P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.24

0.08

2.20

0.35

At2G42600

ATPPC2, PPC2, phosphoenolpyruvate carboxylase 2

0.77

0.05

2.18

0.09

At4G11650

ATOSM34, OSM34, osmotin 34

0.67

0.10

2.16

0.38

At2G23960

Class I glutamine amidotransferase-like superfamily protein

1.55

0.27

2.13

0.21

At1G05300

ZIP5, zinc transporter 5 precursor

0.49

0.05

2.13

0.11

At3G13110

ATSERAT2;2, SAT-1, SAT-A, SAT-M, SAT3, SERAT2;2, serine acetyltransferase 2;2

0.83

0.08

2.12

0.22

At2G22290

ATRAB-H1D, ATRAB6, ATRABH1D, RAB-H1D, RABH1d, RAB GTPase homolog H1D

1.91

0.66

2.10

0.59

At4G20160

RING/U-box superfamily protein (TAIR:AT1G30860.1)

1.71

0.10

2.07

0.17

At1G20390

Transposable element gene

0.56

0.11

2.07

0.04

At5G20280

ATSPS1F, SPS1F, sucrose phosphate synthase 1F

0.77

0.06

2.05

0.17

At5G01870

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

0.71

0.10

2.05

0.51

At3G05858

Unknown protein

1.64

0.09

2.01

0.47

At2G17280

Phosphoglycerate mutase family protein

1.16

0.02

2.01

0.47

At1G26250

Proline-rich extensin-like family protein

0.55

0.16

2.00

0.82

At4G09110

RING/U-box superfamily protein

0.77

0.04

  1. Change in gene expression is shown as the mean and standard deviation (SD)
  2. No change is indicated as “−” in cases when a gene transcript was not determined (read number = zero) in any of the biological replicates under control conditions