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Table 2 Putative fimbriae-associated genes

From: Identification of putative adhesins of Actinobacillus suis and their homologues in other members of the family Pasteurellaceae

ASU2 locus tag GenInfo (GI) number (Possible) gene name Annotated protein function Top App homologue/E value Top Pasteurellaceae homologue/E value Top other homologue/E value
ASU2_00450 407387739 (pilF) c Putative fimbrial biogenesis and twitching motility protein PilF-like protein Ser. 3 str. JL03 2E−116 Actinobacillus capsulatus 4e−114 Vibrio nigripulchritudo 3e−28
ASU2_04295 407388504 flp1 flp operon protein Ser. 4 str. M62 1e−24 Actinobacillus capsulatus 2E−27 Vibrio owensii 2e−05
ASU2_04300 407388505 (flp2) b Hypothetical protein Ser. 7 str. AP76 1e−16 Actinobacillus ureae 3E−24 Vibrio sp. HENC-02 4.3
ASU2_04305 407388506 (tadV) c flp operon protein B; Flp pilus assembly protein, protease CpaA Ser. 5b str. L20 9E−69 Actinobacillus capsulatus 6e−55 Yersinia rohdei ATCC 43380 5e−23
ASU2_04310 407388507 (rcpC) flp operon protein C Ser. 4 str. M62 3e−123 Actinobacillus capsulatus 3E−164 Yersinia similis 2e−19
ASU2_04315 407388508 (rcpA) Rough colony protein A; flp pilus assembly protein, secretin CpaC Ser. 7 str. AP76 0.0 Actinobacillus capsulatus 0.0 Yersinia similis 1e−101
ASU2_04320 407388509 rcpB Rough colony protein B Ser. 12 str. 1096 4e−84 Actinobacillus capsulatus 1E−102 Ochotona princeps 2.3
ASU2_04325 407388510 (tadZ) c flp pilus assembly protein, ATPase; CpaE Ser. 5b str. L20 0.0 Actinobacillus capsulatus 0.0 Yersinia bercovieri ATCC 43970 3e−58
ASU2_04330 407388511 tadA Tight adherence protein A; Flp pilus assembly protein, ATPase CpaF Ser. 5b str. L20 0.0 Actinobacillus capsulatus 0.0 Yersinia aldovae ATCC 35236 4e−179
ASU2_04335 407388512 tadB Tight adherence protein B; Flp pilus assembly protein TadB Ser. 1 str. 4074 0.0 Actinobacillus capsulatus 0.0 Serratia marcescens VGH107 5e−64
ASU2_04340 407388513 tadC Tight adherence protein C; Flp pilus assembly protein TadC Ser. 13 str. N-273 8e−160 Actinobacillus capsulatus 6E−164 Serratia marcescens VGH107 9e−36
ASU2_04345 407388514 tadD Tight adherence protein D; Flp pilus assembly protein TadD, contains TPR repeats Ser. 13 str. N-273 3e−129 Actinobacillus capsulatus 8E−148 Hafnia alvei ATCC 51873 7e−52
ASU2_04350 407388515 tadE Tight adherence protein E Ser. 10 str. D13039 2E−86 Actinobacillus capsulatus 3e−84 Serratia marcescens VGH107 2e−25
ASU2_04355 407388516 tadF Tight adherence protein F Ser. 6 str. Femo 2E−66 Actinobacillus capsulatus 1e−59 Yersinia enterocolitica 2e−12
ASU2_04360 407388517 tadG Tight adherence protein G Ser. 2 str. S1536 0.0 Mannheimia haemolytica 0.0 Yersinia frederiksenii ATCC 33641 6e−19
ASU2_05030 407388651 (pilD) c Fimbrial leader peptidase; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases Ser. 1 str. 4074 3e−56 Actinobacillus ureae 1E−135 Enterococcus faecium EnGen0131 0.014
ASU2_05035 407388652 (pilC) c Pili/fimbriae biogenesis protein; Type II secretory pathway, component PulF Ser. 7 str. AP76 5e−112 Actinobacillus ureae 0.0 Glaciecola punicea DSM 14233 2e−29
ASU2_05040 407388653 (hofB, pilB) c Fimbrial biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Ser. 5b str. L20 0.0 Actinobacillus ureae 0.0 Plesiomonas shigelloides 302-73 3e−117
ASU2_05045 407388654 apfA (ppdD, pilA) c Type 4 prepilin subunit; Tfp pilus assembly protein, major pilin PilA Ser. 12 str. 1096 5e−37 Actinobacillus ureae 1E−70 Bacillus sp. BVB01 5e−20
ASU2_06115 407388868 hofQ (comE) b,c Type II secretory pathway, component HofQ Ser. 5b str. L20 0.0 Actinobacillus ureae 0.0 Plesiomonas shigelloides 302-73 3e−100
ASU2_06120 407388869 (comD) b,c Hypothetical protein; Ribosomal protein S15P/S13E Ser. 5b str. L20 3e−59 Actinobacillus ureae 8.00E−60 Streptomyces sp. AA0539 0.049
ASU2_06125 407388870 (comC) b,c Hypothetical protein Ser. 7 str. AP76 9e−51 Actinobacillus capsulatus 4.00E−77 Klebsiella pneumoniae MGH 52 0.12
ASU2_06130 407388871 (comB) b,c Hypothetical protein Ser. 3 str. JL03 2e−65 Actinobacillus capsulatus 5e−95 Tepidiphilus margaritifer 0.49
ASU2_06135 407388872 (comA) b,c Hypothetical protein Ser. 10 str. D13039 7e−106 Actinobacillus capsulatus 4E−131 Desulfosarcina sp. BuS5 1.9
ASU2_11115 407389857 comF c Competence Ser. 10 str. D13039 9e−97 Actinobacillus capsulatus 7E−150 Serratia fonticola AU-AP2C 7e−47
  1. () indicates a suggested name that was not present in the annotation
  2. aFunction assigned by conserved motifs
  3. bIdentified by BASys
  4. cClassified by description of homologues