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Table 1 Gene and protein ID and genomic location of PGI loci identified in the different species

From: Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates

Species scientific name Species common name UFG2 UFG1 PGI locus DFG1 DFG2 DFG3 Gene ID Protein ID Genomic location Genomic position Strand
Fishes MPHOSPH6 HSD17B2 PGI1 LSM14A SI:DKEY THAP9
Astyanax mexicanus Mexican tetra   HSD17B2 PGI1 LSM14A    ENSAMXT00000018221 ENSAMXP00000018221 Scaffold KB871579.1 7,816,843–7,827,707 Forward
Danio rerio Zebrafish   HSD17B2 PGI1 LSM14A    ENSDART00000022437 ENSDARP00000009909 Chromosome 25 37,001,059–37,026,441 Forward
Gasterosteus aculeatus Three-spined stickleback MPHOSPH6   PGI1 LSM14A    ENSGACT00000010328 ENSGACP00000010306 GroupXIX 8,855,280–8,863,611 Forward
Oreochromis niloticus Nile tilapia MPHOSPH6   PGI1 LSM14A    ENSONIT00000022998 ENSONIP00000022978 Scaffold GL831424.1 532,106–539,134 Forward
Oryzias latipes Medaka MPHOSPH6   PGI1   SI:DKEY   ENSORLT00000000310 ENSORLP00000000310 Chromosome 6 336,560–345,710 Reverse
Poecilia formosa Amazon molly MPHOSPH6   PGI1 LSM14A    ENSPFOT00000000722 ENSPFOP00000000721 Scaffold KI520292.1 32,646–43,864 Forward
Dicentrarchus labrax European seabass MPHOSPH6   PGI1 LSM14A    DLAgn_00260200 DLAgn_00260200 UN:85995004-86018309   
Takifugu rubripes Japanese pufferfish   HSD17B2 PGI1 LSM14A    ENSTRUT00000006700 ENSTRUP00000006657 scaffold_526 29,664–34,652 Reverse
Tetraodon nigroviridis Spotted green pufferfish   HSD17B2 PGI1 ??    ENSTNIT00000023294 ENSTNIP00000023052 Chromosome Un_random 103,153,150–103,157,885 Forward
Gadus morhua Atlantic cod   HSD17B2 PGI1    THAP9 ENSGMOT00000006028 ENSGMOP00000005855 Scaffold_515 95,640–108,132 Forward
Mugil cephalus Striped Mullet   ?? PGI1 ??        
Xiphophorus maculatus Southern platyfish MPHOSPH6   PGI1 LSM14A    ENSXMAT00000007135 NSXMAP00000007127 Scaffold JH556666.1 4,515,304–4,527,053 Reverse
Fishes   KIAA0355 LSM14A PGI WTIP HSD17B2       
Astyanax mexicanus   KIAA0355   PGI2 WTIP    ENSAMXT00000021636 ENSAMXP00000021636 Scaffold KB882149.1 2,238,557–2,258,490 Forward
Danio rerio     PGI2 WTIP    ENSDART00000020914 ENSDARP00000014578 Chromosome 13 51,999,268–52,020,986 Forward
Gadus morhua    ?? PGI2 ??    ENSGMOT00000016031 ENSGMOP00000015632 Scaffold_3436 42,484–54,532 Forward
Gasterosteus aculeatus   KIAA0355   PGI2 WTIP    ENSGACT00000019782 ENSGACP00000019744 GroupII 5,627,138–5,632,419 Forward
Oreochromis niloticus   KIAA0356   PGI2 WTIP    ENSONIT00000003600 ENSONIP00000003599 Scaffold GL831133.1 4,705,311–4,715,207 Reverse
Oryzias latipes   KIAA0355   PGI2   HSD17B2   ENSORLT00000017655 ENSORLP00000017654 Chromosome 3 29,723,585–29,732,093 Reverse
Poecilia_formosa   KIAA0355   PGI2 WTIP    ENSPFOT00000015130 ENSPFOP00000015108 Scaffold KI519656.1 685,683–695,888 Forward
Dicentrarchus labrax   lKIAA0356   PGI2 WTIP    DLAgn_00155520 DLAgn_00155520 LG5 5,056,240–5,064,239  
Takifugu rubripes   KIAA0355   PGI2 WTIP    ENSTRUT00000040726 ENSTRUP00000040584 scaffold_91 917,007–924,134 Forward
Tetraodon nigroviridis   KIAA0355   PGI2 WTIP    ENSTNIT00000013624 ENSTNIP00000013430 Chromosome Un_random 33,376,190–33,381,003 Reverse
Xiphophorus maculatus   KIAA0355   PGI2 WTIP    ENSXMAT00000016551 ENSXMAP00000016527 Scaffold JH556668.1 1,362,881–1,372,790 Reverse
Lepisosteus oculatus Spotted gar KIAA0355   PGI WTIP    ENSLOCT00000002438 ENSLOCP00000002433 Chromosome LG23 2,922,532–2,940,796 Forward
Mammalians   LSM14A KIAA035 PGI WTIP PDCD2L UBA2      
Equus caballus Horse   KIAA0355 PGI     ENSECAT00000020155 ENSECAP00000016531 Chromosome 10 5,434,436–5,460,230 Forward
Felis catus Cat   KIAA0355 PGI    PDCD2L ENSFCAT00000005279   Chromosome E2 18,208,924–18,234,333 Reverse
Homo sapiens Human   KIAA0355 PGI    PDCD2L ENST00000415930 ENSP00000405573 Chromosome 19 34,364,740–34,402,156 Forward
Macaca mulatta Rhesus macaque   KIAA0355 PGI    PDCD2L ENSMMUT00000008231 ENSMMUP00000007737 Chromosome 19 40,926,355-40,964,914 Forward
Oryctolagus cuniculus Rabbit   KIAA0355 PGI    PDCD2L ENSOCUT00000001455 ENSOCUP00000001250 Chromosome 5 4,169,177–4,197,347 Forward
Pongo abelii Sumatran orangutan   KIAA0355 PGI    PDCD2L ENSPPYT00000011442 ENSPPYP00000011012 Chromosome 19 35,031,028–35,068,667 Forward
Sus scrofa Eurasian wild pig   KIAA0355 PGI    PDCD2L ENSSSCT00000003175 ENSSSCP00000003094 Chromosome 6 39,517,086–39,547,942 Reverse
Rattus norvegicus Norwegian rat   KIAA0355 PGI    PDCD2L ENSRNOT00000032613 ENSRNOP00000029515 Chromosome 1 91,207,014–91,234,890 Reverse
Mus musculus House mouse    PGI     ENSMUST00000038027 ENSMUSP00000049355 Chromosome 7 34,202,122–34,230,281 Reverse
Avians/reptiles/amphibians   LSM14A KIAA0355 PGI WTIP UBA2 PDCD2L      
Ficedula albicollis Collared flycatcher   KIAA0355 PGI WTIP    ENSFALT00000008115 ENSFALP00000008082 Scaffold JH603268.1 2,075,371–2,103,822 Reverse
Gallus gallus Chicken   KIAA0355 PGI WTIP    ENSGALT00000007948 ENSGALP00000007934 Chromosome 11 10,450,875–10,471,700 Forward
Meleagris gallopavo Common turkey   KIAA0355 PGI WTIP    ENSMGAT00000006817 ENSMGAP00000006071 Chromosome 13 10,920,111–10,933,784 Forward
Anas platyrhynchos Mallard   KIAA0355 PGI WTIP    ENSAPLT00000010618 ENSAPLP00000009916 Scaffold KB743139.1 1,702,356–1,722,763 Forward
Pelodiscus sinensis Chinese softshell   KIAA0355 PGI WTIP    ENSPSIT00000012892 ENSPSIP00000012831 Scaffold JH210905.1 2,814,958–2,841,275 Reverse
Boiga kraepilini Widespread snake   ?? PGI ??        
Duttaphrynus melanostictus Asian common toad   ?? PGI ??    tr|Q8QFU6|Q8QFU6_DUTME     
Xenopus tropicalis Western Clawed Frog   KIAA0355 PGI WTIP    ENSXETT00000005036 ENSXETP00000005036 Scaffold GL172806.1 377,293-398,724 Reverse
Anolis carolinensis Carolina anole   KIAA0355 PGI ??    ENSACAT00000001365 ENSACAP00000001332 Scaffold GL343773.1 142,574–185,909 Forward
Other lineages    PGI          
Protopterus dolloi African lungfishes ?? PGI ??     gi|44965330|gb|AY389912.1 gi|44965331|gb|AAS49536.1|    
Petromyzon marinus Sea Lamprey   PGI      ENSPMAT00000004427 ENSPMAP00000004410 Scaffold GL481891 3,996–20,619  
Drosophila melanogaster Fruit fly   PGI      FBtr0088679 FBpp0087760 Chromosome 2R 4,798,407–4,801,631 Reverse
Latimeria chalumnae Coelacanth KIAA0355 PGI WTIP     ENSLACT00000000911   Scaffold JH128875.1 5,026–58,037 Reverse
  1. UFG1, upstream flanking gene 1; UFG2, upstream flanking gene 2, DFG1, downstream flanking gene 1; DFG2, downstream flanking gene 2; DFG3, downstream flanking gene 3