Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates

Tine, Mbaye

doi:10.1186/s13104-015-1683-x

BMC Research Notes

Table 1 Gene and protein ID and genomic location of PGI loci identified in the different species

From: Evolutionary significance and diversification of the phosphoglucose isomerase genes in vertebrates

Species scientific name	Species common name	UFG2	UFG1	PGI locus	DFG1	DFG2	DFG3	Gene ID	Protein ID	Genomic location	Genomic position	Strand
Fishes	Species common name	MPHOSPH6	HSD17B2	PGI1	LSM14A	SI:DKEY	THAP9	Gene ID	Protein ID	Genomic location	Genomic position	Strand
Astyanax mexicanus	Mexican tetra		HSD17B2	PGI1	LSM14A			ENSAMXT00000018221	ENSAMXP00000018221	Scaffold KB871579.1	7,816,843–7,827,707	Forward
Danio rerio	Zebrafish		HSD17B2	PGI1	LSM14A			ENSDART00000022437	ENSDARP00000009909	Chromosome 25	37,001,059–37,026,441	Forward
Gasterosteus aculeatus	Three-spined stickleback	MPHOSPH6		PGI1	LSM14A			ENSGACT00000010328	ENSGACP00000010306	GroupXIX	8,855,280–8,863,611	Forward
Oreochromis niloticus	Nile tilapia	MPHOSPH6		PGI1	LSM14A			ENSONIT00000022998	ENSONIP00000022978	Scaffold GL831424.1	532,106–539,134	Forward
Oryzias latipes	Medaka	MPHOSPH6		PGI1		SI:DKEY		ENSORLT00000000310	ENSORLP00000000310	Chromosome 6	336,560–345,710	Reverse
Poecilia formosa	Amazon molly	MPHOSPH6		PGI1	LSM14A			ENSPFOT00000000722	ENSPFOP00000000721	Scaffold KI520292.1	32,646–43,864	Forward
Dicentrarchus labrax	European seabass	MPHOSPH6		PGI1	LSM14A			DLAgn_00260200	DLAgn_00260200	UN:85995004-86018309
Takifugu rubripes	Japanese pufferfish		HSD17B2	PGI1	LSM14A			ENSTRUT00000006700	ENSTRUP00000006657	scaffold_526	29,664–34,652	Reverse
Tetraodon nigroviridis	Spotted green pufferfish		HSD17B2	PGI1	??			ENSTNIT00000023294	ENSTNIP00000023052	Chromosome Un_random	103,153,150–103,157,885	Forward
Gadus morhua	Atlantic cod		HSD17B2	PGI1			THAP9	ENSGMOT00000006028	ENSGMOP00000005855	Scaffold_515	95,640–108,132	Forward
Mugil cephalus	Striped Mullet		??	PGI1	??
Xiphophorus maculatus	Southern platyfish	MPHOSPH6		PGI1	LSM14A			ENSXMAT00000007135	NSXMAP00000007127	Scaffold JH556666.1	4,515,304–4,527,053	Reverse

Fishes		KIAA0355	LSM14A	PGI	WTIP	HSD17B2
Astyanax mexicanus		KIAA0355		PGI2	WTIP		ENSAMXT00000021636	ENSAMXP00000021636	Scaffold KB882149.1	2,238,557–2,258,490	Forward
Danio rerio				PGI2	WTIP		ENSDART00000020914	ENSDARP00000014578	Chromosome 13	51,999,268–52,020,986	Forward
Gadus morhua			??	PGI2	??		ENSGMOT00000016031	ENSGMOP00000015632	Scaffold_3436	42,484–54,532	Forward
Gasterosteus aculeatus		KIAA0355		PGI2	WTIP		ENSGACT00000019782	ENSGACP00000019744	GroupII	5,627,138–5,632,419	Forward
Oreochromis niloticus		KIAA0356		PGI2	WTIP		ENSONIT00000003600	ENSONIP00000003599	Scaffold GL831133.1	4,705,311–4,715,207	Reverse
Oryzias latipes		KIAA0355		PGI2		HSD17B2	ENSORLT00000017655	ENSORLP00000017654	Chromosome 3	29,723,585–29,732,093	Reverse
Poecilia_formosa		KIAA0355		PGI2	WTIP		ENSPFOT00000015130	ENSPFOP00000015108	Scaffold KI519656.1	685,683–695,888	Forward
Dicentrarchus labrax		lKIAA0356		PGI2	WTIP		DLAgn_00155520	DLAgn_00155520	LG5	5,056,240–5,064,239
Takifugu rubripes		KIAA0355		PGI2	WTIP		ENSTRUT00000040726	ENSTRUP00000040584	scaffold_91	917,007–924,134	Forward
Tetraodon nigroviridis		KIAA0355		PGI2	WTIP		ENSTNIT00000013624	ENSTNIP00000013430	Chromosome Un_random	33,376,190–33,381,003	Reverse
Xiphophorus maculatus		KIAA0355		PGI2	WTIP		ENSXMAT00000016551	ENSXMAP00000016527	Scaffold JH556668.1	1,362,881–1,372,790	Reverse
Lepisosteus oculatus	Spotted gar	KIAA0355		PGI	WTIP		ENSLOCT00000002438	ENSLOCP00000002433	Chromosome LG23	2,922,532–2,940,796	Forward

Mammalians		KIAA035	PGI	UBA2
Equus caballus	Horse	KIAA0355	PGI		ENSECAT00000020155	ENSECAP00000016531	Chromosome 10	5,434,436–5,460,230	Forward
Felis catus	Cat	KIAA0355	PGI	PDCD2L	ENSFCAT00000005279		Chromosome E2	18,208,924–18,234,333	Reverse
Homo sapiens	Human	KIAA0355	PGI	PDCD2L	ENST00000415930	ENSP00000405573	Chromosome 19	34,364,740–34,402,156	Forward
Macaca mulatta	Rhesus macaque	KIAA0355	PGI	PDCD2L	ENSMMUT00000008231	ENSMMUP00000007737	Chromosome 19	40,926,355-40,964,914	Forward
Oryctolagus cuniculus	Rabbit	KIAA0355	PGI	PDCD2L	ENSOCUT00000001455	ENSOCUP00000001250	Chromosome 5	4,169,177–4,197,347	Forward
Pongo abelii	Sumatran orangutan	KIAA0355	PGI	PDCD2L	ENSPPYT00000011442	ENSPPYP00000011012	Chromosome 19	35,031,028–35,068,667	Forward
Sus scrofa	Eurasian wild pig	KIAA0355	PGI	PDCD2L	ENSSSCT00000003175	ENSSSCP00000003094	Chromosome 6	39,517,086–39,547,942	Reverse
Rattus norvegicus	Norwegian rat	KIAA0355	PGI	PDCD2L	ENSRNOT00000032613	ENSRNOP00000029515	Chromosome 1	91,207,014–91,234,890	Reverse
Mus musculus	House mouse		PGI		ENSMUST00000038027	ENSMUSP00000049355	Chromosome 7	34,202,122–34,230,281	Reverse

Avians/reptiles/amphibians		KIAA0355	PGI	WTIP
Ficedula albicollis	Collared flycatcher	KIAA0355	PGI	WTIP	ENSFALT00000008115	ENSFALP00000008082	Scaffold JH603268.1	2,075,371–2,103,822	Reverse
Gallus gallus	Chicken	KIAA0355	PGI	WTIP	ENSGALT00000007948	ENSGALP00000007934	Chromosome 11	10,450,875–10,471,700	Forward
Meleagris gallopavo	Common turkey	KIAA0355	PGI	WTIP	ENSMGAT00000006817	ENSMGAP00000006071	Chromosome 13	10,920,111–10,933,784	Forward
Anas platyrhynchos	Mallard	KIAA0355	PGI	WTIP	ENSAPLT00000010618	ENSAPLP00000009916	Scaffold KB743139.1	1,702,356–1,722,763	Forward
Pelodiscus sinensis	Chinese softshell	KIAA0355	PGI	WTIP	ENSPSIT00000012892	ENSPSIP00000012831	Scaffold JH210905.1	2,814,958–2,841,275	Reverse
Boiga kraepilini	Widespread snake	??	PGI	??
Duttaphrynus melanostictus	Asian common toad	??	PGI	??	tr\|Q8QFU6\|Q8QFU6_DUTME
Xenopus tropicalis	Western Clawed Frog	KIAA0355	PGI	WTIP	ENSXETT00000005036	ENSXETP00000005036	Scaffold GL172806.1	377,293-398,724	Reverse
Anolis carolinensis	Carolina anole	KIAA0355	PGI	??	ENSACAT00000001365	ENSACAP00000001332	Scaffold GL343773.1	142,574–185,909	Forward

Other lineages			PGI
Protopterus dolloi	African lungfishes	??	PGI	??	gi\|44965330\|gb\|AY389912.1	gi\|44965331\|gb\|AAS49536.1\|
Petromyzon marinus	Sea Lamprey		PGI		ENSPMAT00000004427	ENSPMAP00000004410	Scaffold GL481891	3,996–20,619
Drosophila melanogaster	Fruit fly		PGI		FBtr0088679	FBpp0087760	Chromosome 2R	4,798,407–4,801,631	Reverse
Latimeria chalumnae	Coelacanth	KIAA0355	PGI	WTIP	ENSLACT00000000911		Scaffold JH128875.1	5,026–58,037	Reverse

UFG1, upstream flanking gene 1; UFG2, upstream flanking gene 2, DFG1, downstream flanking gene 1; DFG2, downstream flanking gene 2; DFG3, downstream flanking gene 3

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ISSN: 1756-0500

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