TY - BOOK AU - Storz, G. AU - Hengge, R. PY - 2010 DA - 2010// TI - Bacterial stress responses PB - American Society for Microbiology Press CY - Washington, DC ID - Storz2010 ER - TY - STD TI - Hecker M, Völker U. General stress response of Bacillus subtilis and other bacteria. In: Advances in microbial physiology. vol 44. New York: Academic Press; 2001. p. 35–91. ID - ref2 ER - TY - JOUR AU - Beales, N. PY - 2004 DA - 2004// TI - Adaptation of microorganisms to cold temperatures, weak acid preservatives, low pH, and osmotic stress: a review JO - Compr Rev Food Sci Food Saf VL - 3 UR - https://doi.org/10.1111/j.1541-4337.2004.tb00057.x DO - 10.1111/j.1541-4337.2004.tb00057.x ID - Beales2004 ER - TY - JOUR AU - Jozefczuk, S. AU - Klie, S. AU - Catchpole, G. AU - Szymanski, J. AU - Cuadros-Inostroza, A. AU - Steinhauser, D. AU - Selbig, J. AU - Willmitzer, L. PY - 2010 DA - 2010// TI - Metabolomic and transcriptomic stress response of Escherichia coli JO - Mol Syst Biol VL - 6 UR - https://doi.org/10.1038/msb.2010.18 DO - 10.1038/msb.2010.18 ID - Jozefczuk2010 ER - TY - JOUR AU - Lushchak, V. I. PY - 2011 DA - 2011// TI - Adaptive response to oxidative stress: bacteria, fungi, plants and animals JO - Comp Biochem Physiol C: Toxicol Pharmacol VL - 153 ID - Lushchak2011 ER - TY - JOUR AU - Ma, M. AU - Liu, Z. L. PY - 2010 DA - 2010// TI - Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae JO - BMC Genom VL - 11 UR - https://doi.org/10.1186/1471-2164-11-660 DO - 10.1186/1471-2164-11-660 ID - Ma2010 ER - TY - JOUR AU - Abbott, D. A. AU - Knijnenburg, T. A. AU - Poorter, L. M. I. AU - Reinders, M. J. T. AU - Pronk, J. T. AU - Maris, A. J. A. PY - 2007 DA - 2007// TI - Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae JO - FEMS Yeast Res VL - 7 UR - https://doi.org/10.1111/j.1567-1364.2007.00242.x DO - 10.1111/j.1567-1364.2007.00242.x ID - Abbott2007 ER - TY - JOUR AU - An, J. AU - Kwon, H. AU - Kim, E. AU - Lee, Y. M. AU - Ko, H. J. AU - Park, H. AU - Choi, I. -. G. AU - Kim, S. AU - Kim, K. H. AU - Kim, W. PY - 2015 DA - 2015// TI - Tolerance to acetic acid is improved by mutations of the TATA-binding protein gene JO - Environ Microbiol VL - 17 UR - https://doi.org/10.1111/1462-2920.12489 DO - 10.1111/1462-2920.12489 ID - An2015 ER - TY - JOUR AU - Xia, J. -. M. AU - Yuan, Y. -. J. PY - 2009 DA - 2009// TI - Comparative lipidomics of four strains of Saccharomyces cerevisiae reveals different responses to furfural, phenol, and acetic acid JO - J Agric Food Chem VL - 57 UR - https://doi.org/10.1021/jf802720t DO - 10.1021/jf802720t ID - Xia2009 ER - TY - JOUR AU - Tai, S. L. AU - Boer, V. M. AU - Daran-Lapujade, P. AU - Walsh, M. C. AU - Winde, J. H. AU - Daran, J. -. M. AU - Pronk, J. T. PY - 2005 DA - 2005// TI - Two-dimensional transcriptome analysis in chemostat cultures: combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M410573200 DO - 10.1074/jbc.M410573200 ID - Tai2005 ER - TY - JOUR AU - Brauer, M. J. AU - Huttenhower, C. AU - Airoldi, E. M. AU - Rosenstein, R. AU - Matese, J. C. AU - Gresham, D. AU - Boer, V. M. AU - Troyanskaya, O. G. AU - Botstein, D. PY - 2008 DA - 2008// TI - coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast JO - Mol Biol Cell VL - 19 UR - https://doi.org/10.1091/mbc.E07-08-0779 DO - 10.1091/mbc.E07-08-0779 ID - Brauer2008 ER - TY - JOUR AU - Singh, J. AU - Kumar, D. AU - Ramakrishnan, N. AU - Singhal, V. AU - Jervis, J. AU - Garst, J. F. AU - Slaughter, S. M. AU - DeSantis, A. M. AU - Potts, M. AU - Helm, R. F. PY - 2005 DA - 2005// TI - Transcriptional response of Saccharomyces cerevisiae to desiccation and rehydration JO - Appl Environ Microbiol VL - 71 UR - https://doi.org/10.1128/AEM.71.12.8752-8763.2005 DO - 10.1128/AEM.71.12.8752-8763.2005 ID - Singh2005 ER - TY - JOUR AU - Schimel, J. AU - Balser, T. C. AU - Wallenstein, M. PY - 2007 DA - 2007// TI - Microbial stress-response physiology and its implications for ecosystem function JO - Ecology VL - 88 UR - https://doi.org/10.1890/06-0219 DO - 10.1890/06-0219 ID - Schimel2007 ER - TY - JOUR AU - Çakar, Z. P. AU - Seker, U. O. S. AU - Tamerler, C. AU - Sonderegger, M. AU - Sauer, U. PY - 2005 DA - 2005// TI - Evolutionary engineering of multiple-stress resistant Saccharomyces cerevisiae JO - FEMS Yeast Res VL - 5 UR - https://doi.org/10.1016/j.femsyr.2004.10.010 DO - 10.1016/j.femsyr.2004.10.010 ID - Çakar2005 ER - TY - JOUR AU - Kültz, D. PY - 2005 DA - 2005// TI - Molecular and evolutionary basis of the cellular stress response JO - Annu Rev Physiol VL - 67 UR - https://doi.org/10.1146/annurev.physiol.67.040403.103635 DO - 10.1146/annurev.physiol.67.040403.103635 ID - Kültz2005 ER - TY - JOUR AU - Abee, T. AU - Wouters, J. A. PY - 1999 DA - 1999// TI - Microbial stress response in minimal processing JO - Int J Food Microbiol VL - 50 UR - https://doi.org/10.1016/S0168-1605(99)00078-1 DO - 10.1016/S0168-1605(99)00078-1 ID - Abee1999 ER - TY - JOUR AU - Ramos, J. L. AU - Gallegos, M. a. -. T. AU - Marqués, S. AU - Ramos-González, M. -. I. AU - Espinosa-Urgel, M. AU - Segura, A. PY - 2001 DA - 2001// TI - Responses of gram-negative bacteria to certain environmental stressors JO - Curr Opin Microbiol. VL - 4 UR - https://doi.org/10.1016/S1369-5274(00)00183-1 DO - 10.1016/S1369-5274(00)00183-1 ID - Ramos2001 ER - TY - JOUR AU - Love, N. AU - Bott, C. PY - 2002 DA - 2002// TI - Evaluating the role of microbial stress response mechanisms in causing biological treatment system upset JO - Water Sci Technol VL - 46 ID - Love2002 ER - TY - JOUR AU - Heer, D. AU - Heine, D. AU - Sauer, U. PY - 2009 DA - 2009// TI - Resistance of Saccharomyces cerevisiae to high concentrations of furfural is based on NADPH-dependent reduction by at least two oxireductases JO - Appl Environ Microbiol VL - 75 UR - https://doi.org/10.1128/AEM.01649-09 DO - 10.1128/AEM.01649-09 ID - Heer2009 ER - TY - JOUR AU - Edgar, R. AU - Barrett, T. PY - 2006 DA - 2006// TI - NCBI GEO standards and services for microarray data JO - Nat Biotechnol VL - 24 UR - https://doi.org/10.1038/nbt1206-1471 DO - 10.1038/nbt1206-1471 ID - Edgar2006 ER - TY - JOUR AU - Barrett, T. AU - Troup, D. B. AU - Wilhite, S. E. AU - Ledoux, P. AU - Rudnev, D. AU - Evangelista, C. AU - Kim, I. F. AU - Soboleva, A. AU - Tomashevsky, M. AU - Marshall, K. A. PY - 2009 DA - 2009// TI - NCBI GEO: archive for high-throughput functional genomic data JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn764 DO - 10.1093/nar/gkn764 ID - Barrett2009 ER - TY - JOUR AU - Barrett, T. AU - Troup, D. B. AU - Wilhite, S. E. AU - Ledoux, P. AU - Evangelista, C. AU - Kim, I. F. AU - Tomashevsky, M. AU - Marshall, K. A. AU - Phillippy, K. H. AU - Sherman, P. M. PY - 2011 DA - 2011// TI - NCBI GEO: archive for functional genomics data sets—10 years on JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1184 DO - 10.1093/nar/gkq1184 ID - Barrett2011 ER - TY - JOUR AU - Stoesser, G. AU - Tuli, M. A. AU - Lopez, R. AU - Sterk, P. PY - 1999 DA - 1999// TI - The EMBL nucleotide sequence database JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.1.18 DO - 10.1093/nar/27.1.18 ID - Stoesser1999 ER - TY - JOUR AU - Faith, J. J. AU - Driscoll, M. E. AU - Fusaro, V. A. AU - Cosgrove, E. J. AU - Hayete, B. AU - Juhn, F. S. AU - Schneider, S. J. AU - Gardner, T. S. PY - 2008 DA - 2008// TI - Many microbe microarrays database: uniformly normalized affymetrix compendia with structured experimental metadata JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm815 DO - 10.1093/nar/gkm815 ID - Faith2008 ER - TY - JOUR AU - Schena, M. AU - Shalon, D. AU - Davis, R. W. AU - Brown, P. O. PY - 1995 DA - 1995// TI - Quantitative monitoring of gene expression patterns with a complementary DNA microarray JO - Science VL - 270 UR - https://doi.org/10.1126/science.270.5235.467 DO - 10.1126/science.270.5235.467 ID - Schena1995 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - JOUR AU - Barrett, T. AU - Wilhite, S. E. AU - Ledoux, P. AU - Evangelista, C. AU - Kim, I. F. AU - Tomashevsky, M. AU - Marshall, K. A. AU - Phillippy, K. H. AU - Sherman, P. M. AU - Holko, M. PY - 2013 DA - 2013// TI - NCBI GEO: archive for functional genomics data sets—update JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks1193 DO - 10.1093/nar/gks1193 ID - Barrett2013 ER - TY - STD TI - Huwaldt JA. Plot Digitizer: GPL. Available: http://plotdigitizer.sourceforge.net/. Accessed 2013 May 6. UR - http://plotdigitizer.sourceforge.net/ ID - ref28 ER - TY - JOUR AU - Stigler, S. M. PY - 1989 DA - 1989// TI - Francis Galton’s account of the invention of correlation JO - Stat Sci VL - 4 UR - https://doi.org/10.1214/ss/1177012580 DO - 10.1214/ss/1177012580 ID - Stigler1989 ER -