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Table 1 Descriptive statistics of the SSR marker loci

From: A method for genotyping elite breeding stocks of leaf chicory (Cichorium intybus L.) by assaying mapped microsatellite marker loci

 

General statistics

H-statistics

F-statistics

Gene flow

Locus

N

pi

I

na

ne

Ho

He

Ha

Fis

Fit

Fst

Nm

M1.1

400

0.423

0.741

3.0

2.009

0.165

0.503

0.117

0.017

0.827

0.824

0.054

M1.2

482

0.407

1.497

7.0

3.612

0.315

0.725

0.247

−0.055

0.640

0.658

0.130

M1.3

480

0.467

1.374

8.0

3.007

0.342

0.669

0.297

−0.154

0.471

0.542

0.212

LG1 mean

454

0.432

1.204

6.0

2.876

0.274

0.632

0.220

−0.064

0.646

0.675

0.132

M2.4

482

0.317

1.667

9.0

4.703

0.291

0.789

0.263

−0.249

0.588

0.670

0.123

M2.5

484

0.401

1.370

8.0

3.357

0.252

0.704

0.250

−0.086

0.610

0.641

0.140

M2.6

486

0.438

1.792

11.0

4.061

0.251

0.755

0.244

−0.134

0.634

0.677

0.119

LG2 mean

484

0.386

1.610

9.3

4.040

0.265

0.749

0.252

−0.156

0.611

0.663

0.127

M3.7

480

0.592

1.096

7.0

2.335

0.213

0.573

0.202

−0.194

0.590

0.657

0.131

M3.8

302

0.669

0.880

4.0

1.994

0.007

0.500

0.003

−0.067

0.995

0.996

0.001

M3.9

478

0.523

1.220

5.0

2.746

0.239

0.637

0.213

−0.320

0.580

0.682

0.117

LG3 mean

420

0.595

1.065

5.3

2.358

0.153

0.570

0.139

−0.193

0.722

0.778

0.083

M4.10b

486

0.410

1.225

4.0

3.074

0.165

0.676

0.194

0.014

0.720

0.716

0.099

M4.11b

482

0.847

0.481

3.0

1.360

0.017

0.265

0.052

0.632

0.927

0.801

0.062

M4.12

480

0.506

1.661

10.0

3.357

0.208

0.704

0.191

−0.103

0.699

0.727

0.094

LG4 mean

483

0.587

1.122

5.7

2.597

0.130

0.548

0.146

0.181

0.782

0.748

0.085

M5.13

476

0.517

1.129

4.0

2.684

0.202

0.629

0.184

−0.141

0.673

0.714

0.100

M5.14

474

0.884

0.359

2.0

1.258

0.114

0.206

0.102

−0.264

0.383

0.511

0.239

M5.15

478

0.699

0.754

4.0

1.796

0.092

0.444

0.074

−0.282

0.783

0.831

0.051

LG5 mean

476

0.700

0.748

3.3

1.913

0.136

0.426

0.120

−0.229

0.613

0.685

0.130

M6.16

476

0.546

1.304

5.0

2.835

0.181

0.649

0.177

−0.145

0.685

0.725

0.095

M6.17

480

0.469

1.707

9.0

3.750

0.358

0.735

0.293

−0.269

0.500

0.606

0.163

M6.18

480

0.527

1.495

8.0

3.063

0.208

0.675

0.169

−0.183

0.703

0.749

0.084

LG6 mean

479

0.514

1.502

7.3

3.216

0.249

0.686

0.213

−0.199

0.629

0.693

0.114

M7.19

480

0.554

0.996

3.0

2.460

0.479

0.595

0.346

−0.622

0.052

0.416

0.352

M7.20

484

0.531

0.739

4.0

2.023

0.236

0.507

0.241

−0.305

0.402

0.542

0.211

M7.21

474

0.878

0.390

3.0

1.275

0.076

0.216

0.099

−0.165

0.590

0.648

0.136

LG7 mean

479

0.654

0.708

3.3

1.919

0.264

0.439

0.228

−0.364

0.348

0.535

0.233

M8.22

480

0.990

0.058

2.0

1.021

0.021

0.021

0.016

−0.069

−0.009

0.056

4.192

M8.23

482

0.512

1.501

9.0

3.143

0.261

0.683

0.210

−0.307

0.605

0.698

0.108

M8.24

478

0.398

1.664

8.0

4.144

0.243

0.760

0.195

−0.245

0.675

0.739

0.088

LG8 mean

480

0.633

1.074

6.3

2.769

0.175

0.488

0.140

−0.207

0.424

0.498

1.463

M9.25

484

0.686

0.763

4.0

1.828

0.132

0.454

0.138

0.178

0.732

0.674

0.121

M9.26

478

0.490

1.354

6.0

3.101

0.088

0.679

0.176

0.459

0.860

0.741

0.087

M9.27

482

0.386

1.792

10.0

4.611

0.440

0.785

0.341

−0.327

0.425

0.567

0.191

LG9 mean

481

0.520

1.303

6.7

3.180

0.220

0.639

0.218

0.103

0.672

0.660

0.133

  1. The sample size of individual genotypes (N), the frequency of the most common marker allele (pi), estimates of Shannon’s information index of phenotypic diversity (I), the average number of observed alleles (na) and the effective number of alleles (ne) per locus, the observed heterozygosity (Ho), the expected heterozygosity computed using Levene (He), the average heterozygosity (Ha), Wright’s inbreeding coefficients Fis and Fit, the fixation index (Fst), and gene flow (Nm)