TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucl Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Katoh, K. AU - Standley, D. M. PY - 2013 DA - 2013// TI - MAFFT multiple sequence alignment software version 7: improvements in performance and usability JO - Mol Biol Evol VL - 30 UR - https://doi.org/10.1093/molbev/mst010 DO - 10.1093/molbev/mst010 ID - Katoh2013 ER - TY - STD TI - Rambaut A. Se-Al: sequence alignment editor. http://evolve.zoo.ox.ac.uk/software/Se-Al. UR - http://evolve.zoo.ox.ac.uk/software/Se-Al ID - ref3 ER - TY - JOUR AU - Waterhouse, A. M. AU - Procter, J. B. AU - Martin, D. M. AU - Clamp, M. AU - Barton, G. J. PY - 2009 DA - 2009// TI - Jalview Version 2—a multiple sequence alignment editor and analysis workbench JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp033 DO - 10.1093/bioinformatics/btp033 ID - Waterhouse2009 ER - TY - JOUR AU - Gouy, M. AU - Guindon, S. AU - Gascuel, O. PY - 2010 DA - 2010// TI - SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msp259 DO - 10.1093/molbev/msp259 ID - Gouy2010 ER - TY - STD TI - Maddison WP, Maddison DR. Mesquite: a modular system for evolutionary analysis. http://mesquiteproject.org. Version 3.04. UR - http://mesquiteproject.org ID - ref6 ER - TY - JOUR AU - Okonechnikov, K. AU - Golosova, O. AU - Fursov, M. PY - 2012 DA - 2012// TI - Ugene team: unipro UGENE: a unified bioinformatics toolkit JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts091 DO - 10.1093/bioinformatics/bts091 ID - Okonechnikov2012 ER - TY - JOUR AU - Fourment, M. AU - Holmes, E. C. PY - 2014 DA - 2014// TI - Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data JO - BMC Evolut Biol VL - 14 UR - https://doi.org/10.1186/s12862-014-0163-6 DO - 10.1186/s12862-014-0163-6 ID - Fourment2014 ER - TY - JOUR AU - Bininda-Emonds, O. R. PY - 2005 DA - 2005// TI - transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences JO - BMC Bioinform VL - 6 UR - https://doi.org/10.1186/1471-2105-6-156 DO - 10.1186/1471-2105-6-156 ID - Bininda-Emonds2005 ER -