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Table 1 Comparison of Seqotron to other sequence editors

From: Seqotron: a user-friendly sequence editor for Mac OS X

 

Seqotron

Jalview

SeaView

Se-Al

Mesquite

Concatenate sequences

Yes

–

Yes

Yes

Yes

Mouse-based alignment

Yes

Yes

–

Yes

–

Transaligna

Yes

–

–

Yes

–

Temporary translation

Yes

–

–

Yes

–

Alignment zooming

Yes

–

–

Yes

–

Distance matrix

Yes

–

–

–

Yes

Loading tree formats

NEXUS, NEWICK

NEWICK

–

–

NEXUS

Estimating trees

NJb, UPGMAc, MLd

NJ, UPGMA

NJ, MPe, ML

–

NJ, MP

Tree resampling

Bootstrap, jackknife

–

Bootstrap

–

–

  1. aAlignment of protein-coding DNA sequences using their amino acid translation
  2. bNeighbor-joining (NJ)
  3. cUnweighted pair-group method using arithmetic averages (UPGMA)
  4. dMaximum likelihood (ML)
  5. eMaximum parsimony (MP)