Skip to main content

Table 9 Gene-disease associations from gene-year and gene-country analysis

From: Integrating text mining, data mining, and network analysis for identifying genetic breast cancer trends

Gene

Disease associations for gene

Genes that share more diseases with this gene

Country associations for gene

Disease name

Score

Gene name

# of shared diseases

Country name

# of abstracts

ERBB2

Breast neoplasms

0.414

EGFR

15

United States

4271

Mammary neoplasms, experimental

0.4

PTGS2

13

Italy

808

Neoplasm metastasis

0.396

SOD2

12

Japan

806

Adenocarcinoma

0.363

TP53

11

China

799

Ovarian neoplasms

0.331

STAT3

10

United Kingdom

674

Prostatic neoplasms

0.329

CCND1

10

Germany

620

Lung neoplasms

0.329

ESR1

10

France

486

Stomach neoplasms

0.321

KRAS

9

Canada

433

Cholangiocarcinoma

0.308

TNF

9

South Korea

347

Glioma

0.306

TNFSF10

9

Spain

329

ESR1

Breast neoplasms

0.423

SOD2

14

United States

5429

Alzheimer disease

0.358

EGFR

13

United Kingdom

1249

Neoplasm metastasis

0.345

PTGS2

12

Japan

918

Carcinoma

0.344

TNF

11

China

764

Coronary artery disease

0.342

CDH1

10

Italy

727

Migraine disorders

0.333

ACE

10

France

569

Obesity

0.327

ERBB2

10

Germany

517

Leiomyoma

0.327

PTEN

9

Canada

515

Myocardial infarction

0.323

STAT3

9

South Korea

338

Infertility, male

0.321

TP53

9

Sweden

299

PGR

Breast neoplasms

0.38

EGFR

7

United States

1887

Endometriosis

0.346

ESR1

6

Japan

456

Carcinoma

0.32

ESR2

6

Italy

404

Meningioma

0.307

STAT3

5

China

385

Adenocarcinoma

0.304

EFEMP1

5

United Kingdom

311

Mammary neoplasms, animal

0.3

CDH1

5

France

294

Mammary neoplasms, experimental

0.3

PHB

5

Germany

245

Mesothelioma

0.3

PDGFA

5

Canada

188

Recurrence

0.3

STAT5A

5

South Korea

169

Malignant neoplasm breast

0.126

ENO1

5

Sweden

131

EGF

Hypomagnesemia 4, renal

0.6

SOD2

11

United States

2199

Wounds and injuries

0.4

IL6

9

United Kingdom

408

Breast neoplasms

0.325

MMP9

9

Japan

394

Prostatic neoplasms

0.322

PTGS2

9

China

378

Carcinoma, hepatocellular

0.317

TNF

9

Italy

298

Neoplasm metastasis

0.315

PTEN

8

Germany

239

Glioblastoma

0.311

EGFR

8

South Korea

211

Adenocarcinoma

0.307

IGF1

8

Canada

205

Kidney diseases

0.301

IL8

8

France

173

Stomach ulcer

0.3

TGFB1

7

Spain

112

BRCA1

Breast-ovarian cancer, familial, Susceptibility To, 1

0.7

CDH1

7

United States

1845

Malignant neoplasm breast

0.54

CCND1

7

United Kingdom

395

Malignant neoplasm of ovary

0.44

SOD2

7

Canada

304

Breast neoplasms

0.419

BRCA2

6

France

222

Mammary neoplasms, experimental

0.4

HRAS

6

The Netherlands

218

Ovarian neoplasms

0.381

STAT3

6

Italy

197

Neoplasms

0.375

EGFR

6

China

182

Carcinoma

0.366

ERBB2

6

Spain

143

Hereditary breast and ovarian cancer Syndrome

0.359

ESR1

6

Germany

140

Prostatic neoplasms

0.318

AKT1

5

Japan

124

BRCA2

Fanconi anemia, complementation Group D1

0.7

BRCA1

6

United States

885

Malignant neoplasm breast

0.54

CTNNB1

6

United kingdom

256

Ovarian neoplasms

0.464

ERBB2

6

Canada

203

Prostatic neoplasms

0.409

PTEN

5

Italy

119

Medulloblastoma

0.401

SOD2

5

The Netherlands

115

Breast neoplasms

0.392

TNF

5

Germany

102

Hereditary breast and ovarian cancer Syndrome

0.334

TNFSF10

5

France

100

Fanconi ANEMIA

0.326

AKT1

4

Spain

93

Pancreatic neoplasms

0.309

BRIP1

4

Australia

73

Wilms tumor

0.3

CDH1

4

Israel

70

CDKN2A

Melanoma-pancreatic cancer syndrome

0.6

TP53

15

United States

1809

Melanoma, cutaneous malignant, susceptibility To, 2

0.6

SOD2

12

China

431

Lung neoplasms

0.442

KRAS

9

Japan

340

Stomach neoplasms

0.411

PTGS2

9

United Kingdom

325

Esophageal neoplasms

0.41

ABCB1

7

Italy

297

Neoplasms

0.391

CSF3

7

France

224

Adenocarcinoma

0.358

EGFR

7

Germany

218

Glioma

0.341

ESR1

6

South Korea

202

Precursor cell lymphoblastic leukemia-Lymphoma

0.338

MET

6

Canada

186

Carcinoma, non-small-cell lung

0.332

ERBB2

6

Spain

136

ALPPL2

Abortion, spontaneous

0.3

CEACAM1

1

United States

104

Parkinson disease

0.003

HSD17B1

1

Germany

32

Stroke

0.003

IFI35

1

United Kingdom

30

Carcinoma in situ

0.001

IFI44

1

Italy

28

Seminoma

0.001

IFI6

1

France

18

Retinal diseases

<0.001

IFNA10

1

Japan

16

Embryonal neoplasm

<0.001

IGFBP1

1

Canada

13

Carcinoma, embryonal

<0.001

IGFBP6

1

Greece

11

IL11

1

The Netherlands

9

IL12B

1

China

9

CD99

Chondrosarcoma, mesenchymal

0.3

PDGFRA

1

United States

342

Neuroectodermal tumors, primitive, Peripheral

0.012

BCL2

1

Japan

77

Sarcoma, ewing

0.01

IL1A

1

Germany

74

Breast neoplasms

0.005

MKI67

1

Italy

63

Carcinoma

0.005

China

56

Neuroectodermal tumors, primitive

0.004

United Kingdom

52

Osteosarcoma

0.003

Canada

37

Neoplasms

0.003

France

26

Lymphoma

0.003

Australia

24

Adenocarcinoma

0.003

The Netherlands

22

CHI3L1

Schizophrenia

0.319

TNF

3

United States

90

Glioblastoma

0.311

MET

3

Japan

17

Glioma

0.31

MGMT

2

United Kingdom

17

Neoplasm invasiveness

0.303

TGM2

2

Italy

15

Osteoarthritis

0.301

ACO1

2

France

12

Asthma-related traits, susceptibility To, 7

0.3

MMP9

2

Denmark

10

Hypertension

0.103

GDNF

2

Germany

6

Asthma

0.017

FTL

2

Australia

6

Arthritis, rheumatoid

0.009

ENO1

2

Finland

5

Neoplasm malignant

0.005

EGF

2

India

5

SOD1

Amyotrophic lateral sclerosis 1

0.66

TNF

19

United States

265

Amyotrophic lateral sclerosis

0.551

SOD2

17

Italy

42

Hypertension

0.402

IL6

15

Japan

40

Deficiency diseases

0.4

PTGS2

14

India

39

Motor neuron disease

0.341

NOS2

13

China

31

Down syndrome

0.323

CAT

13

United Kingdom

28

Atherosclerosis

0.31

AGT

11

Germany

26

Diabetes mellitus, type 2

0.31

IL1B

10

The Netherlands

25

Ischemia

0.309

IFNG

10

Turkey

20

Parkinson disease

0.309

ALB

10

Canada

18

AMN

Imerslund-grasbeck syndrome

0.601

TNF

3

United States

138

Acute kidney injury

0.3

KNG1

3

United Kingdom

32

Neurogenic inflammation

0.3

TAC1

3

Germany

22

Edema

0.3

IL6

2

Japan

18

Extravasation of diagnostic and Therapeutic Materials

0.3

POMC

2

China

16

anemia, megaloblastic

0.003

CALCA

2

Canada

12

adrenoleukodystrophy

0.003

PTGS2

2

France

10

Nervous system malformations

0.003

INS

2

Italy

9

Malabsorption syndromes

0.001

KLK1

1

The Netherlands

9

Adrenomyeloneuropathy

<0.001

LCN2

1

Australia

7

CD40LG

Hyper-igm immunodeficiency syndrome, Type 1

0.629

CCL2

4

United States

66

Coronary artery disease

0.306

IL1B

3

Germany

15

Pneumonia

0.3

IL6

3

United Kingdom

12

Amyotrophic lateral sclerosis

0.3

TNF

3

Japan

11

Hypersensitivity

0.3

IL8

3

Italy

10

Necrosis

0.3

IFNG

3

Argentina

9

Hypertension, pulmonary

0.3

IL5RA

2

China

9

Diabetes mellitus, type 1

0.101

HMOX1

2

Australia

7

Enterocolitis, necrotizing

0.1

IL13

2

Denmark

6

Periodontal diseases

0.1

IL17A

2

The Netherlands

6

CD79A

Agammaglobulinemia

0.3

BTK

1

United States

22

Leukemia, lymphocytic, chronic, B Cell

0.003

CD19

1

France

8

Lymphoma, non-hodgkin

0.003

IGLL1

1

China

7

Lymphoma, B-cell

0.003

LRRC8A

1

Japan

6

Leukemia, myeloid, acute

0.003

India

4

Leukemia

0.003

Spain

4

Multiple myeloma

0.003

Sweden

3

Lymphoma

<0.001

Belgium

3

Takayasu arteritis

<0.001

Finland

3

Lymphoma, large B-Cell, diffuse

<0.001

United Kingdom

3

PRL

Prolactinoma

0.415

DRD2

9

United States

294

Hyperprolactinemia

0.412

POMC

8

United Kingdom

59

Adenoma

0.33

IL6

6

Italy

55

Lupus erythematosus, systemic

0.325

CYP19A1

6

Canada

40

Pituitary neoplasms

0.311

TNF

6

France

31

Autistic disorder

0.304

ESR2

5

Australia

29

Growth hormone-secreting pituitary Adenoma

0.302

AGT

5

Japan

28

Endometriosis

0.301

CNR1

5

China

23

Hypopituitarism

0.301

CRH

5

Spain

20

Amenorrhea

0.301

CYP17A1

5

India

19

AFP

Carcinoma, hepatocellular

0.398

MMP9

5

United States

46

Liver diseases

0.303

HMOX1

4

Japan

12

Liver cirrhosis, experimental

0.3

ENO1

3

China

11

Breast neoplasms

0.3

MMP2

3

Germany

8

Mammary neoplasms, experimental

0.3

ESR1

3

Italy

7

Liver neoplasms

0.019

HRAS

3

France

6

Recurrent malignant neoplasm

0.015

NOS2

3

Canada

5

Hepatitis B

0.014

IGF1

3

Ireland

4

Neoplasm malignant

0.012

PTGS2

3

Turkey

3

Down syndrome

0.011

TNFSF10

3

Singapore

3

POMC

Obesity

0.454

TNF

22

United States

27

Proopiomelanocortin deficiency

0.4

IL6

17

Italy

10

Cushing syndrome

0.331

AGT

15

Japan

9

Pituitary acth hypersecretion

0.315

IL1B

15

France

7

Adrenal cortex diseases

0.309

PTGS2

15

United kingdom

6

Acth syndrome, ectopic

0.306

SOD2

14

Spain

5

Heart failure

0.304

ALB

12

The netherlands

5

Spasms, infantile

0.303

INS

12

Germany

4

Hypertension

0.303

BDNF

11

Austria

4

Osteoporosis

0.303

CRH

11

Poland

4