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Table 2 Genes regulated by CSF2 in trophectoderm after adjustment for a false discovery rate of 2 %

From: Regulation of gene expression in the bovine blastocyst by colony stimulating factor 2

Gene symbol or description

Mean counts, control

Mean counts, CSF2

Fold change, CSF2/control

Adjusted P value

Upregulated

 CLIC6

0

6.7

–

0.025

 OR5AN1

0.6

9.7

16.22

0.021

 CSN3

42.4

554.8

13.08

0.000

 Uncharacterized (ENSBTAG00000033304)

11.1

127.5

11.46

0.000

 Exocyst complex component 1-like (LOC100335745)

1.2

9.9

8.09

0.049

 Uncharacterized (ENSBTAG00000040552)

2.9

20.8

7.19

0.012

 HPCAL4

427.9

2667.1

6.23

0.000

 CCDC146

12.9

70.3

5.43

0.000

 DEAD/H box polypeptide 26B-like (LOC100138355)

7.4

34.9

4.72

0.002

 Uncharacterized (LOC100335677)

17.2

68.7

3.99

0.012

 TKTL1

64.6

205.7

3.18

0.001

 FOS

344.1

775.3

2.25

0.042

 DUSP1

897.1

1959.3

2.18

0.008

 SHE

216.5

445.6

2.06

0.018

Downregulated

 SLC25A40-like (LOC510700)

451.6

179.4

0.40

0.045

 AKAP4

104.7

30.0

0.29

0.004

 MUC1

284.2

73.8

0.26

0.000

 VAV3

43.1

10.3

0.24

0.003

 VAV3

52.6

11.5

0.22

0.002

 VAV3

34.1

7.0

0.21

0.001

 PAQR7

341.6

20.1

0.06

0.000

 NPY1R

333.9

18.8

0.06

0.000

 Interferon regulatory factor-like (ENSBTAG00000031214)

26.4

1.4

0.05

0.000