Table 1 Genome properties and pan-genome analysis
From: Inverse correlation between salt tolerance and host-adaptation in mycobacteria
Genome | GenBank accession N° | GC % | N° of CDS | N° of CDS in groups | Unique core genes | Core genome | Core genes | Pan genome | Pan genes |
|---|---|---|---|---|---|---|---|---|---|
Group 1 (Sensitive) | 290 | 1563 | 37,132 | 6043 | 70,580 | ||||
M. tuberculosis H37Rv | NC_00962 | 65.6 | 3906 | 3863 | 45 | ||||
M. tuberculosis str.Beijing/NITR203 | NC_021054 | 66 | 4110 | 1969 | 141 | ||||
M. tuberculosis str. Erdman = ATCC 35801 | NC_20559 | 65.6 | 4245 | 3960 | 285 | ||||
M. canettii CIPT 140010059 | NC_015848 | 66 | 3861 | 3796 | 81 | ||||
M. bovis BCG str. Pasteur 1173P2 | NC_008769 | 66 | 3949 | 3884 | 67 | ||||
M. marinum M | NC_010612 | 66 | 5423 | 5092 | 349 | ||||
M. ulcerans Agy99 | NC_008611 | 65 | 4160 | 4070 | 310 | ||||
Group 2 (Intermediate) | 0 | ||||||||
M. avium 104 | NC_00859 | 69 | 5120 | 4817 | 311 | ||||
M. intracellulare ATCC 13950 | NC_016946 | 68 | 5144 | 4777 | 380 | ||||
M. massiliense str. GO06 | NC_018150 | 64 | 4558 | 4446 | 112 | ||||
Group 3 (resistant) | 0 | ||||||||
M. abscessus T | NC_010397 | 64 | 4920 | 4701 | 223 | ||||
M. abscessus subsp. bolletii BD | AHAS01000000 | 64 | 4923 | 4657 | 268 | ||||
M. abscessus subsp. bolletii CCUG 48898 | AKVF010000000 | 64 | 5511 | 4867 | 656 | ||||
M. avium subsp. hominissuis A5 | AUZQ01000000 | 69 | 4509 | 4401 | 113 | ||||
M. fortuitum subsp. fortuitum DSM 46621 | ALQB01000000 | 66 | 6241 | 5373 | 985 | ||||