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Table 4 Relative assembly scores for different insert sizes

From: Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly

Quality metric

Insert size

Genome

Bce

Efa

Sen

Pst

Corrected NG50

TS

0.54

0.84

n.d.

0.96

IS1

1

0.95

0.95

0.97

IS2 or IS3

0.74

1

1

1

max**

590,346

409,939

300,036

217,864

NGA50

TS

0.53

0.85

n.d.

0.91

IS1

0.85

0.97

0.96

0.93

IS2 or IS3

1

1

1

1

max**

922,992

442,857

405,417

250,853

  1. Relative assembly scores rely on SPAdes assembly validations and are summarized per genome and library category. For Sen each relative assembly score refers to 5 assembly sets. Relative assembly scores of all other genomes comprise 10 assembly sets each
  2. max** Absolute value in nucleotides of the maximal relative assembly score of the column