Table 5 Detected stress response genes in MG1655 and C58
From: Thermodynamically optimal whole-genome tiling microarray design and validation
Gene | Description | Detection |
|---|---|---|
Escherichia coli K12 substr. MG1655 | ||
 dnaX | Temperature sensitive for replication and growth [39] | SAM, ANOVA |
 groL | Acid tolerance response [41] | SAM, ANOVA |
 hslO | Heat shock response [52] | SAM |
 entF | Transcriptional regulation in C and N limited cultures [40] | SAM, ANOVA |
 copA | Essential element in copper homeostasis and copper proteins; involved in oxidative stress protection [42, 43] | SAM |
 cusS | Copper tolerance in anaerobic [43] | SAM |
 nusA | Cold shock response [53] | ANOVA |
 uvrA | DNA repair and SOS response [54] | ANOVA |
 aceE | Induce the oxidative and acid resistance gene yfiD [40] | ANOVA |
 kat f | Control of catalase-hydroperoxidase [55] | ANOVA |
 cydA | Control cytochrome bd oxidase on LB but not on minimal medium [56] | ANOVA |
 mreBCD | Involved in cell shapping and osmotolerant [57] | ANOVA |
Agrobacterium tumefaciens C58 | ||
 cspA | Cold shock protein [4] | SAM |
 rpoH | Temperature sensitive, control heat shock protein [46] | SAM |
 groEL | Heat shock protein (stress protein) [58] | SAM, ANOVA |
 dnaK | Heat shock protein [59] but also induced by other stresses [58] | SAM, ANOVA |
 livJ | ABC transporter associated with the uptake of metal ions and involved in antioxidative stress defense [44] | ANOVA |
 dadA | Catalyzes the oxidative deamination of D-amino acids [45] | SAM |
 fepC | Outermembrane receptor [60] | ANOVA |
 vir a | Virulence genes induced under several stresses, such as acidic condition or mitomycin C attack [58] | SAM, ANOVA |
 chv a | Induced by acidic pH [50] | ANOVA |
 sit a | Related to iron uptake [61] | ANOVA |