Table 1 Summary of SSR mining and frequency of different repeat types identified in the examined ESTs from the Prunus species assayed
From: In silico search, characterization and validation of new EST-SSR markers in the genus Prunus
Parameters | Values |
|---|---|
SSR mining | |
Total number of EST sequences examined | 111,788 |
Total number of SSRs identified including poly-A and poly-T | 55,884 |
Total number of SSRs after removing poly-A and poly-T | 45,764 |
Number of sequences containing more than 1 SSR | 316 |
Repeat type a | |
Dinucleotide | 12,043 (26.31 %) |
Trinucleotide | 6675 (14.58 %) |
Tetranucleotide | 244 (0.53 %) |
Pentanucleotide | 125 (0.27 %) |
Hexanucleotide | 68 (0.14 %) |
Heptanucleotide | 15 (0.03 %) |
Octanucleotide | 9 (0.01 %) |
Nonanucleotide | 0 (0) |
Decanucleotide | 1 (0.002 %) |