Table 1 16S gene composition of the mock community
From: Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene
Strain | Genome sizea | # 16S genesa | Genome copies per microgramb | Reference or DSMZ catalogue numberc | |
|---|---|---|---|---|---|
1 | Campylobacter jejuni 11168 | 1,641,481 | 3 | 5.64E+08 | [23] |
2 | Salmonella enterica serovar Typhimurium SL1344 | 4,878,012 | 6 | 1.89E+08 | [24] |
3 | Escherichia coli mg1655 | 4,656,144 | 7 | 1.99E+08 | [25] |
4 | Megasphaera elsdenii LC-1 | 2,474,718 | 7 | 3.74E+08 | DSM 20460 |
5 | Cloacibacillus porcorum CL-84 | 3,585,187 | 3 | 2.57E+08 | [26] |
6 | Brachyspira hyodysenteriae | 3,050,489 | 1 | 3.04E+08 | [27] |
7 | Haemophilus parasuis 29755 | 2,224,137 | 2 | 4.17E+08 | [28] |
8 | Bordetella bronchiseptica 1289 | 5,207,899 | 3 | 1.78E+08 | [29] |
9 | Staphylococcus aureus USA300 | 2,872,915 | 5 | 3.22E+08 | [30] |
10 | Bacteroides thetaiotaomicron | 6,293,399 | 5 | 1.47E+08 | DSM 2079 |
11 | Faecalibacterium prausnitzii A2-165 | 3,080,849 | 3 | 3.01E+08 | DSM 17677 |
12 | Streptococcus parasanguinis | 2,153,652 | 4 | 4.30E+08 | DSM 6778 |
13 | Parabacteroides merdae | 4,431,877 | 3 | 2.09E+08 | DSM 19495 |
14 | Oscillibacter valericigenes | 4,470,622 | 3 | 2.07E+08 | DSM 18026 |
15 | Desulfovibrio gigas | 3,788,225 | 4 | 2.45E+08 | DSM 1382 |
16 | Lactobacillus delbrueckii subspecies bulgaricus | 1,864,998 | 9 | 4.97E+08 | DSM 20081 |
17 | Coriobacterium glomerans | 2,115,681 | 2 | 4.38E+08 | DSM 20642 |
18 | Oxalobacter formigenes BA-2 | 2,509,362 | 1 | 3.69E+08 | DSM 4420 |
19 | Roseburia hominis A2-183 | 3,592,125 | 4 | 2.58E+08 | DSM 16839 |
20 | Methanobrevibacter smithii d | 1,704,865 | 1 | 5.43E+08 | DSM 2375 |