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Table 1 16S gene composition of the mock community

From: Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene

  Strain Genome sizea # 16S genesa Genome copies per microgramb Reference or DSMZ catalogue numberc
1 Campylobacter jejuni 11168 1,641,481 3 5.64E+08 [23]
2 Salmonella enterica serovar Typhimurium SL1344 4,878,012 6 1.89E+08 [24]
3 Escherichia coli mg1655 4,656,144 7 1.99E+08 [25]
4 Megasphaera elsdenii LC-1 2,474,718 7 3.74E+08 DSM 20460
5 Cloacibacillus porcorum CL-84 3,585,187 3 2.57E+08 [26]
6 Brachyspira hyodysenteriae 3,050,489 1 3.04E+08 [27]
7 Haemophilus parasuis 29755 2,224,137 2 4.17E+08 [28]
8 Bordetella bronchiseptica 1289 5,207,899 3 1.78E+08 [29]
9 Staphylococcus aureus USA300 2,872,915 5 3.22E+08 [30]
10 Bacteroides thetaiotaomicron 6,293,399 5 1.47E+08 DSM 2079
11 Faecalibacterium prausnitzii A2-165 3,080,849 3 3.01E+08 DSM 17677
12 Streptococcus parasanguinis 2,153,652 4 4.30E+08 DSM 6778
13 Parabacteroides merdae 4,431,877 3 2.09E+08 DSM 19495
14 Oscillibacter valericigenes 4,470,622 3 2.07E+08 DSM 18026
15 Desulfovibrio gigas 3,788,225 4 2.45E+08 DSM 1382
16 Lactobacillus delbrueckii subspecies bulgaricus 1,864,998 9 4.97E+08 DSM 20081
17 Coriobacterium glomerans 2,115,681 2 4.38E+08 DSM 20642
18 Oxalobacter formigenes BA-2 2,509,362 1 3.69E+08 DSM 4420
19 Roseburia hominis A2-183 3,592,125 4 2.58E+08 DSM 16839
20 Methanobrevibacter smithii d 1,704,865 1 5.43E+08 DSM 2375
  1. aAll except C. porcorum were calculated by the Joint Genome Institute’s Integrated Microbial Genomes Database https://img.jgi.doe.gov/cgi-bin/w/main.cgi. C. porcorum was calculated manually (BioProject PRJNA335387)
  2. bEstimates were calculated by URI Genomics & Sequencing Center http://cels.uri.edu/gsc/cndna.html
  3. cGenomic DNAs were acquired from DSMZ, the Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures https://www.dsmz.de/home.html
  4. dThis archaeon was included as a control for non-specific amplification
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