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Fig. 1 | BMC Research Notes

Fig. 1

From: Transcriptomic SNP discovery for custom genotyping arrays: impacts of sequence data, SNP calling method and genotyping technology on the probability of validation success

Fig. 1

Circular plot showing the hybrid transcriptome assembly. The inner track represents the breakdown of the transcriptome into 454 (purple) and Illumina (blue) components. The middle and outer tracks show the depth of coverage of the 454 and Illumina reads plotted on a log scale. Transcripts are sorted in order of average Illumina coverage. As we required at least ten fold Illumina coverage of a given nucleotide to call a SNP, Illumina coverage of transcripts with less than tenfold average coverage has been truncated zero

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