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Table 1 List of primers used for sequencing

From: Primer development to obtain complete coding sequence of HA and NA genes of influenza A/H3N2 virus

Fragment

Primer

Sequence (5′-3′)

Location

Tm (°C)

HA1

HA-1Fa

CTCGAGAGCAAAAGCAGGGG

5′ end

65.62

HA269F

CTCAGTGTGATGGCTTCCAA

269–288

 

HA465 R

GTTATTAGATCTCCTTATG

465–483

 

HA907Ra

GGTTTGTCATTGGGAATGCT

907–926

61.22

HA2

HA828Fa

ACGAAGTGGGAAAAGCTCAATA

828–849

62.31

HA1266F

TCAGGACCTTGAGAAATATGTTG

1266–1288

 

HA + 1778Ra

AGTAGAAACAAGGGTGTTTT

3′ end

57.15

NA1

NA-1Fa

GAGCAAAAGCAGGAGTAAAG

5′ end

59.13

NA243F

AGCAGAATACAGAAATTGGTC

243–263

 

NA385R

GTCAGGATCGCATGACACAT

385–406

 

NA787Ra

TGACAATGTGCTAGTATGAAC

787–807

58.05

NA2

NA636Fa

AGATAGTGTTGTTTCATGGTC

636–656

57.96

NA989F

ACAGCTCCAGCAGTAGCCATTG

989–1010

 

NA + 1413Ra

AGTAGAAACAAGGAGTTTTT

3′ end

54.63

  1. a Primers used for RT-PCR