Table 1 Predicted protein functions of large or biologically interesting groups provided from OrthoMCL results
Group no. | Total protein count | No. of proteins in “Candidatus R. magnifica” | No. of proteins in “Candidatus V. okutanii” | No. of proteins in T. crunogena | Proposed function | |
|---|---|---|---|---|---|---|
Groups unique to T. crunogena | 1 | 40 | 0 | 0 | 40 | Diguanylate phosphodiesterases/cyclases |
2 | 13 | 0 | 0 | 13 | Transmembrane histidine kinases | |
3 | 13 | 0 | 0 | 13 | Methyl-accepting chemotaxis sensory transducers | |
4 | 11 | 0 | 0 | 11 | Two component response regulators | |
Groups with multiple copies in T. crunogena (but single in “Candidatus R. magnifica” and “Candidatus V. okutanii”) | 5 | 8 | 1 | 1 | 6 | Transcriptional regulators (Fis family) |
11 | 6 | 1 | 1 | 4 | Ammonium transporters | |
14 | 5 | 1 | 1 | 3 | ABC transporters | |
16 | 4 | 1 | 1 | 2 | Bifunctional protein FolD | |
17 | 4 | 1 | 1 | 2 | Peptidyl-prolyl cis–trans isomerases | |
18 | 4 | 1 | 1 | 2 | Non-canonical purine NTP pyrophosphatases | |
19 | 4 | 1 | 1 | 2 | Peptidyl-prolyl cis–trans isomerases | |
20 | 4 | 1 | 1 | 2 | Cold-shock DNA-binding proteins | |
21 | 4 | 1 | 1 | 2 | Multicopper oxidases | |
26 | 4 | 1 | 1 | 2 | Lon proteases | |
Groups unique to “Candidatus R. magnifica” | 746 | 2 | 2 | 0 | 0 | Glycosyl transferases (family 2) |
Groups with multiple copies in “Candidatus R. magnifica” (but single in “Candidatus V. okutanii” and T.crunogena) | 27 | 4 | 2 | 1 | 1 | Histidinol-phosphate aminotransferases |
Groups with multiple copies in all three species | 9 | 6 | 2 | 2 | 2 | Elongation factors (Tu) |
10 | 6 | 2 | 2 | 2 | Nitrogen regulatory proteins (P-II) |