Table 1 T3SS genes significantly enriched in metagenome and metatranscriptome datasets from HMY animals
Dataset | KEGG gene | Definition/gene name | Mean RPM | WRS | sPLS coefficient | ||
|---|---|---|---|---|---|---|---|
LMY ± SD | HMY ± SD | Fold change | P adj. BH | ||||
Metagenome | K03224 | ATP synthase type III secretion protein sctN | 2.47 ± 1.22 | 8.32 ± 2.45 | 3.37 | <0.01 | 0.02 |
|  | K03227 | Type III secretion protein sctS | 0.46 ± 0.23 | 1.54 ± 0.44 | 3.33 | <0.01 | 0.02 |
|  | K03230 | Type III secretion protein sctV | 3.68 ± 1.64 | 12.2 ± 3.52 | 3.32 | <0.01 | 0.02 |
|  | K03228 | Type III secretion protein sctT | 1.11 ± 0.56 | 3.57 ± 1.10 | 3.21 | <0.01 | 0.02 |
|  | K03229 | Type III secretion protein sctU | 1.60 ± 0.72 | 5.05 ± 1.47 | 3.16 | <0.01 | 0.02 |
|  | K03226 | Type III secretion protein sctR | 1.23 ± 0.52 | 3.78 ± 1.21 | 3.06 | <0.01 | 0.01 |
|  | K03223 | Type III secretion protein sctL | 0.46 ± 0.23 | 1.31 ± 0.38 | 2.83 | <0.01 | 0.02 |
|  | K03222 | Type III secretion protein sctJ | 0.81 ± 0.44 | 2.52 ± 0.74 | 3.13 | 0.02 | 0.02 |
|  | K03219 | Type III secretion protein sctC | 1.22 ± 0.60 | 3.71 ± 1.03 | 3.03 | 0.02 | 0.02 |
|  | K13853 | 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase aroG, aroA | 0.14 ± 0.04 | 0.38 ± 0.39 | 2.82 | 0.03 | NA |
|  | K04058 | Type III secretion protein sctW | 0.17 ± 0.10 | 0.40 ± 0.07 | 2.33 | 0.05 | 0.02 |
|  | K04056 | Type III secretion protein sctO | 0.11 ± 0.07 | 0.30 ± 0.08 | 2.72 | 0.05 | 0.02 |
Metatranscriptome | K03230 | Type III secretion protein sctV | 0.98 ± 0.33 | 2.42 ± 0.97 | 2.47 | 0.03 | NA |
|  | K00814 | Alanine transaminase GPT | 2.15 ± 0.77 | 4.77 ± 1.25 | 2.21 | 0.03 | 0.03 |
|  | K00772 | 5′-methylthioadenosine phosphorylase mtaP | 3.07 ± 0.84 | 7.64 ± 5.98 | 2.49 | 0.04 | NA |
|  | K03226 | Type III secretion protein sctR | 0.18 ± 0.15 | 0.62 ± 0.30 | 3.41 | 0.04 | 0.03 |