Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep

Table 3 Gene set enrichment analysis of the metagenome dataset

KEGG pathway	NES	NOM P-val	FDR q-val	FWER P-val
ko03070-bacterial secretion system	1.70	0.019	0.470	0.386
ko00983-drug metabolism and other enzymes	1.55	0.039	0.688	0.773
ko00250-alanine, aspartate and glutamate metabolism	1.55	0.036	0.538	0.782

Pathways with genes differentially present or expressed based on nominal P value (NOM P ≤ 0.05) are shown, ranked by normalised enrichment score (NES). Corrected P values for false discovery rate (FDR q-val) and familywise-error rate (FWER P val) are shown.

ISSN: 1756-0500