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Table 2 Alignment statistics

From: Rattus norvegicus BN/SHR liver and heart left ventricle ribosomal RNA depleted directional RNA sequencing

Description

Aligned reads (absolute numbers and percent of trimmed reads)

Unique alignments (absolute numbers and percent of aligned reads)

Non-duplicated aligned reads (absolute numbers and percent of aligned reads)

Reads aligning to ribosomal RNA (absolute numbers and percent of trimmed reads)

BN-03 liver

37,870,875 (96.4%)

32,882,723 (86.8%)

14,091,152 (37.2%)

805,959 (2.1%)

BN-03 heart left ventricle

34,925,794 (96.6%)

30,737,415 (88.0%)

13,866,921 (39.7%)

211,474 (0.6%)

BN-04 liver

39,082,130 (96.8%)

34,683,358 (88.7%)

15,931,304 (40.8%)

181,485 (0.5%)

BN-04 heart left ventricle

38,793,389 (96.6%)

33,970,899 (87.6%)

14,413,293 (37.2%)

53,931 (0.1%)

SHR-02 liver

31,681,912 (95.4%)

27,079,893 (85.5%)

10,814,241 (34.1%)

151,962 (0.5%)

SHR-02 heart left ventricle

32,713,041 (95.0%)

28,471,299 (87.0%)

12,435,350 (38.0%)

284,145 (0.8%)

SHR-03 liver

29,610,437 (95.5%)

25,567,357 (86.3%)

10,308,328 (34.8%)

201,844 (0.7%)

SHR-03 heart left ventricle

30,803,403 (94.94%)

27,026,756 (87.7%)

12,470,719 (40.4%)

65,253 (0.2%)

Illumina human body map 2.0 liver (SRA accession number ERR030895)

45,896,887 (94.5%)

42,741,402 (93.1%)

10,370,858 (22.6%)

548,720 (1.1%)