Table 1 Transcriptome assembly statistics
Total trinity ‘genes’ | 128739 |
Total trinity transcripts | 144213 |
Maximum length | 5634 |
Minimum length | 201 |
Percent GC | 36.75 |
Statistics based on ALL transcript contigs | |
Contig N10 | 1986 |
Contig N20 | 1459 |
Contig N30 | 1128 |
Contig N40 | 896 |
Contig N50 | 716 |
Median contig length | 402 |
Mean contig length | 573 |
Total assembled bases | 82,672,833 |
Statistics based on LONGEST ISOFORM per “GENE” | |
Contig N10 | 1797 |
Contig N20 | 1298 |
Contig N30 | 1001 |
Contig N40 | 796 |
Contig N50 | 636 |
Median contig length | 382 |
Mean contig length | 533 |
Total assembled bases | 68,601,167 |