Use of DAVID algorithms for clustering custom annotated gene lists in a non-model organism, rainbow trout

BMC Research Notes

Table 1 Changes in the number of genes shared among different numbers of modules with kappa score

Comparison	Number of modules	Number of genes shared among modules
Comparison	Number of modules	K = 0.1	K = 0.2	K = 0.3	K = 0.35	K = 0.4	K = 0.5	K = 0.6	K = 0.7	K = 0.8	K = 0.9
Control_MIH	1	861	1145	985	1128	1539	1443	1229	883	650	548
	2	1511	1384	1167	847	486	158	110	2	0	0
	3	746	436	415	343	110	23	17	4	0	0
	4	146	105	117	131	23	2	0	0	0	0
	5	24	20	16	27	16	1	0	0	0	0
	6	1	0	4	5	2	0	0	0	0	0
	7	0	0	9	2	0	0	0	0	0	0
Control_Fresh	1	431	391	585	704	657	536	444	302	236	197
	2	653	439	264	147	83	25	15	0	0	0
	3	172	235	91	34	11	4	4	0	0	0
	4	22	70	17	9	6	0	0	0	0	0
	5	1	14	3	1	0	0	0	0	0	0
	6	0	5	1	0	0	0	0	0	0	0
Control_SPH	1	201	282	281	236	184	132	113	71	51	43
	2	224	101	39	20	5	1	1	1	0	0
	3	72	44	6	0	0	0	0	0	0	0
	4	19	9	0	0	0	0	0	0	0	0
	5	5	1	0	0	0	0	0	0	0	0

ISSN: 1756-0500