Table 1 miRCancerdb query results representations/views.

Table view

This is a tidy tabular presentation of the search results. The table consists of four columns: mirna_base, miRNA miRBase ID; feature (mRNA/protein) hits; study, TCGA study identifier; and cor, calculated correlation

Dot view

This is a point graph representation of the search results. Columns represent each query miRNA in each TCGA study and rows represent feature (mRNA/protein) hits. Each point is scaled by the correlation value and colored by the direction of the correlation; positive or negative. This is a bar graph representation of the search results. Panels represents each query miRNA in each TCGA study. On the x-axis are the feature (mRNA/protein) hits and on the y-axis are the correlation values

Bar view

This is a bar graph representation of the search results. Panels represents each query miRNA in each TCGA study. On the x-axis are the feature (mRNA/protein) hits and on the y-axis are the correlation values

Profile view

This is a point graph representation of the expression profiles of query miRNAs. Each panel represent a TCGA study. On the x-axis are the query miRNAs and on the y-axis are the log count transformation values. Points are jittered on the x-axis for better visibility

Summary view

This is a summary report about the query miRNAs and TCGA studies. It includes three sections. First, pie charts showing the percentage of positive and negative correlated features (mRNA/protein) with each query miRNA in each TCGA study. Second, a table with the total number of targetscan known targets for each miRNA. Finally, density plots showing the distribution of the correlation values of all and target features (mRNA/protein). Each panel represents a TCGA study and curves are colored by the corresponding miRNAs

Selection view

A tool to show the available TCGA studies and miRNAs