Skip to main content

Table 1 Elapsed time for TREE2FASTA execution on 1000+ sequence FASTA datasets

From: TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees

Database (edited scheme) Sequences Length (bp) Wall-clock CPU
tufA (color) 1957 483 1.055 1.025
tufA (color + annotation) 1957 483 1.056 1.040
16S PhytoREF (color) 4191 3379 12.973 12.646
16S PhytoREF (color + annotation) 4191 3379 13.164 12.871
  1. Time reported as wall-clock (= ‘real’) and CPU (‘user’ + ‘sys’). See text for computing system specifications. Length refers to the sequence multiple-alignment length [in base pair (bp)]