Fig. 1

Illustrations of RAId_GUI when analyzing the spectral data file PSM1029_07FEB15_ABRF_FT_100c.mzXML. a Main dialog window of RAId_GUI with appropriate parameters selected in the “New Job” tab; b main dialog window of the “More Parameters” tab; c the Process Queue window; d peptide PFD plot, readily accessible under “Plot Results” menu, of this example run