Organism | Name | Primers/probes | Target region |
---|---|---|---|
Blastocystis sp. | Blasto FWD F5 | 5′-GGTCCGGTGAACACTTTGGATTT-3′ | 18S |
Blasto R F2 | 5′-CCTACGGAAACCTTGTTACGACTTCA-3′ | ||
Blasto probe | 5′-FAM-TCGTGTAAATCTTACCATTTAGAGGA-MGBNFQ-3′ | ||
Cryptosporidium parvum/hominis | 1PS_F | 5′-AACTTTAGCTCCAGTTGAGAAAGTACTC-3′ | Hsp70 gene |
1PS_R | 5′-CATGGCTCTTTACCGTTAAAGAATTCC-3′ | ||
Crypt_P | 5′-FAM-AATACGTGTAGAACCACCAACCAATACAACATC-TAMRA-3′ | ||
Cyclospora cayetanensis | Cyclo250F | 5′-TAGTAACCGAACGGATCGCATT-3′ | 18S |
Cyclo350R | 5′-AATGCCACGTAGGCCAATA-3′ | ||
Cyclo281T | 5′-FAM-CCGGCGATAGATCATTCAAGTTTCTGACC-TAMRA-3′ | ||
Cystoisospora belli | Ib-40F | 5′-ATATTCCCTGCAGCATGTCTGTTT-3′ | ITS2 |
Ib-129R | 5′-CCACACGCGTATTCCAGAGA-3′ | ||
Ib-81Taq | 5′-FAM-CAAGTTCTGCTCACGCGCTTCTGG-TAMRA-3′ | ||
Dientamoeba fragilis | Df-124F | 5′-CAACGGATGTCTTGGCTCTTTA-3′ | 18S |
Df-221R | 5′-TGCATTCAAAGATCGAACTTATCAC-3′ | ||
Df-172revT | 5′-VIC CAATTCTAGCCGCTTAT-BHQ1-3′ | ||
Enterocytozoon bieneusi | FEB1 | 5′-CGCTGTAGTTCCTGCAGTAAACTATGCC-3′ | 18S |
REB1 | 5′-CTTGCGAGCGTACTATCCCCAGAG-3′ | ||
PEB1 | 5′-FAM-ACGTGGGCGGGAGAAATCTTTAGTGTTCGGG-TAMRA-3′ | ||
Giardia intestinalis | Giardia-80F | 5′-GACGGCTCAGGACAACGGTT-3′ | 18S |
Giardia-127R | 5′-TTGCCAGCGGTGTCCG-3′ | ||
Giardia-105T | 5′-FAM-CCCGCGGCGGTCCCTGCTAG-BHQ1-3′ | ||
TTB (all bacteria) | TTB_16S_F | 5′- AGAGTTTGATCMTGGCTCAG-3′ | 16S |
TTB_16S_R | 5′- TTACCGCGGCKGCTGGCAC-3′ | ||
TTB338K_FAM | 5′-FAM- CCAKACTCCTACGGGAGGCAGCAG-3′ |