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Table 1 The performance of oxy-proteins sub-class SVM-models (Ery, Hcy, Heme, Hemo, Leg and Myo) in different approach and comparison between oxy-50 and oxy-90 output data

From: Harnessing the evolutionary information on oxygen binding proteins through Support Vector Machines based modules

 

ACC

Sen

Sep

MCC

50%

90%

50%

90%

50%

90%

50%

90%

Ery

 AC

95.65

97.14

34.03

67.33

96.79

97.75

0.53

0.80

 DC

90.29

93.26

55.56

94.32

90.93

93.24

0.65

0.93

 PSSM

94.15

93.56

64.58

90.91

94.69

93.61

0.76

0.92

 AC–DC

90.43

89.17

61.11

94.03

90.97

89.07

0.70

0.91

Hcy

 AC

97.18

98.06

100.00

92.92

97.14

98.20

0.99

0.95

 DC

93.36

95.09

98.44

94.17

93.28

95.12

0.96

0.94

 PSSM

94.40

90.41

100.00

95.63

94.31

90.27

0.97

0.92

 AC–DC

93.19

94.02

100.00

94.38

93.08

94.01

0.97

0.94

Heme

 AC

86.25

91.73

92.57

94.90

78.49

88.89

0.79

0.90

 DC

89.57

93.21

98.98

99.26

78.01

87.79

0.87

0.93

 PSSM

90.09

89.00

99.07

99.55

79.07

79.56

0.88

0.89

 AC–DC

87.41

90.55

98.82

99.31

73.41

82.69

0.84

0.90

Hemo

 AC

82.99

87.43

87.80

94.87

80.01

81.34

0.77

0.85

 DC

84.95

89.85

93.65

98.64

79.55

82.67

0.89

0.89

 PSSM

87.26

88.17

97.78

99.24

80.74

79.12

0.88

0.88

 AC–DC

83.49

87.08

96.92

99.09

75.16

77.26

0.84

0.87

Leg

 AC

98.76

99.13

97.92

100.00

98.77

99.12

0.99

0.99

 DC

94.50

93.78

100.00

100.00

94.44

93.75

0.97

0.97

 PSSM

98.25

97.43

100.00

100.00

98.23

97.42

0.99

0.99

 AC–DC

96.84

94.53

100

100.00

96.81

94.50

0.98

0.97

Myo

 AC

92.92

96.62

59.38

86.50

93.47

96.86

0.71

0.91

 DC

89.60

92.19

62.50

92.25

90.05

92.19

0.70

0.92

 PSSM

93.06

91.02

76.56

90.75

93.33

91.03

0.83

0.90

 AC–DC

86.60

85.95

67.19

91.50

86.91

85.82

0.71

0.87

  1. AC Amino acid composition, DC dipeptide composition, PSSM position specific scoring matrix, AC–DC hybrid profile, ACC accuracy, Sen sensitivity, Sep specificity, MCC Matthews correlation coefficient