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Table 1 Transcriptomic comparison between fresh TNBC cells and their freeze/thawed counterparts

From: Tumor analysis: freeze–thawing cycle of triple-negative breast cancer cells alters tumor CD24/CD44 profiles and the percentage of tumor-infiltrating immune cells

ProbeId

Gene name

logFC

FC

t

P value

Adj. P val

B

DESC

ENTREZID

ENSEMBL

BT133_fresh

BT134_fresh

BT138_fresh

BT133_thawed

BT134_thawed

BT138_thawed

10216_at

PRG4

2.97

7.81

2.57

0.04

0.85

− 4.41

Proteoglycan 4

10216.00

ENSG00000116690

5.18

3.84

5.88

8.73

5.41

9.64

664613_at

MIR544A

2.46

5.48

4.28

0.00

0.85

− 4.29

MicroRNA 544a

664613.00

ENSG00000207587

4.13

2.41

2.94

4.70

6.14

6.01

767568_at

SNORD113-8

2.42

5.35

2.56

0.04

0.85

− 4.41

Small nucleolar RNA, C/D box 113-8

767568.00

ENSG00000200367

3.96

3.09

3.01

4.14

5.27

7.91

407000_at

MIR218-1

2.31

4.95

2.71

0.03

0.85

− 4.40

MicroRNA 218-1

407000.00

ENSG00000207732

4.05

3.62

3.13

4.19

5.86

7.67

102723604_at

LOC102723604

2.14

4.42

3.04

0.02

0.85

− 4.37

Uncharacterized LOC102723604

102723604.00

ENSG00000258928

5.04

3.47

5.05

5.37

6.98

7.63

105369519_at

LOC105369519

2.08

4.22

2.52

0.04

0.85

− 4.42

Uncharacterized LOC105369519

105369519.00

NA

2.96

3.41

3.46

3.78

5.09

7.19

2633_at

GBP1

2.06

4.17

2.62

0.04

0.85

− 4.41

Guanylate binding protein 1

2633.00

ENSG00000117228

5.85

3.16

3.90

6.79

6.98

5.32

26822_at

SNORD14A

2.05

4.13

3.54

0.01

0.85

− 4.33

Small nucleolar RNA, C/D box 14A

26822.00

ENSG00000272034

5.95

3.94

4.02

6.68

7.05

6.30

767579_at

SNORD114-3

1.99

3.97

2.87

0.03

0.85

− 4.38

Small nucleolar RNA, C/D box 114-3

767579.00

ENSG00000201839

4.05

2.30

2.54

5.67

5.51

3.68

342908_at

ZNF404

1.78

3.44

4.01

0.01

0.85

− 4.30

Zinc finger protein 404

342908.00

ENSG00000176222

5.56

5.29

4.22

7.18

6.18

7.07

107983995_at

NA

1.65

3.14

3.44

0.01

0.85

− 4.34

NA

NA

NA

3.95

3.77

3.77

5.11

4.74

6.58

767606_at

SNORD114-26

1.64

3.11

3.43

0.01

0.85

− 4.34

Small nucleolar RNA, C/D box 114-26

767606.00

ENSG00000200413

3.98

2.44

2.47

5.02

4.20

4.59

664612_at

MIR539

1.57

2.98

3.38

0.01

0.85

− 4.34

MicroRNA 539

664612.00

ENSG00000202560

7.15

7.17

7.22

7.77

8.84

9.66

54518_at

APBB1IP

1.57

2.97

2.52

0.04

0.85

− 4.42

Amyloid beta precursor protein binding family B member 1 interacting protein

54518.00

ENSG00000077420

6.12

3.54

4.64

6.29

6.31

6.39

100033820_at

SNORD116-28

1.53

2.88

2.46

0.05

0.85

− 4.42

Small nucleolar RNA, C/D box 116-28

100033820.00

ENSG00000278123

4.08

2.25

3.17

4.17

4.15

5.75

8404_at

SPARCL1

1.48

2.78

2.65

0.04

0.85

− 4.40

SPARC like 1

8404.00

ENSG00000152583

6.89

4.74

5.71

7.73

7.09

6.94

100289635_at

ZNF605

1.45

2.73

3.65

0.01

0.85

− 4.32

Zinc finger protein 605

100289635.00

ENSG00000196458

6.09

4.60

5.45

7.06

6.56

6.86

105376805_at

LOC105376805

1.41

2.66

3.09

0.02

0.85

− 4.36

Uncharacterized LOC105376805

105376805.00

ENSG00000238142

4.47

4.24

3.96

4.62

6.27

6.01

100128002_at

LOC100128002

1.41

2.66

2.52

0.04

0.85

− 4.42

Uncharacterized LOC100128002

100128002.00

NA

3.36

3.72

3.03

4.18

6.05

4.11

158131_at

OR1Q1

1.36

2.57

2.49

0.05

0.85

− 4.42

Olfactory receptor family 1 subfamily Q member 1

158131.00

ENSG00000165202

3.88

2.84

3.53

5.66

3.69

5.00

100616251_at

MIR1587

1.36

2.57

2.60

0.04

0.85

− 4.41

MicroRNA 1587

100616251.00

ENSG00000263972

4.55

4.60

4.25

5.02

5.44

7.03

106481206_at

RNU6-94P

1.31

2.47

2.59

0.04

0.85

− 4.41

RNA, U6 small nuclear 94, pseudogene

106481206.00

NA

3.97

3.61

3.31

5.37

3.82

5.62

57562_at

CEP126

1.30

2.46

4.04

0.01

0.85

− 4.30

Centrosomal protein 126

57562.00

ENSG00000110318

4.80

3.93

4.71

6.19

5.70

5.45

5170_at

PDPK1

1.29

2.44

2.47

0.05

0.85

− 4.42

3-Phosphoinositide dependent protein kinase 1

5170.00

ENSG00000140992

4.17

3.49

3.67

6.09

5.04

4.07

26787_at

SNORD61

1.28

2.43

3.60

0.01

0.85

− 4.33

Small nucleolar RNA, C/D box 61

26787.00

ENSG00000206979

2.63

2.18

3.34

3.57

4.13

4.28

26770_at

SNORD79

1.23

2.35

2.91

0.03

0.85

− 4.38

Small nucleolar RNA, C/D box 79

26770.00

NA

5.33

4.32

5.01

6.87

5.94

5.55

90499_at

FAM95A

1.22

2.32

2.49

0.05

0.85

− 4.42

Family with sequence similarity 95 member A

90499.00

NA

3.93

3.53

3.65

4.23

4.49

6.04

100126355_at

MIR365A

1.20

2.30

2.60

0.04

0.85

− 4.41

MicroRNA 365a

100126355.00

ENSG00000199130

5.26

3.96

4.05

6.12

4.97

5.78

441728_at

LOC441728

1.20

2.29

3.29

0.02

0.85

− 4.35

Golgin-like pseudogene

441728.00

NA

3.29

3.39

3.15

4.38

3.82

5.21

5228_at

PGF

1.19

2.28

2.78

0.03

0.85

− 4.39

Placental growth factor

5228.00

ENSG00000119630

3.93

3.80

5.04

4.97

5.99

5.36

619564_at

SNORD72

1.17

2.24

3.08

0.02

0.85

− 4.36

Small nucleolar RNA, C/D box 72

619564.00

ENSG00000212296

2.29

1.80

1.89

2.94

3.95

2.60

168667_at

BMPER

1.15

2.21

5.79

0.00

0.85

− 4.24

BMP binding endothelial regulator

168667.00

ENSG00000164619

4.90

4.78

4.60

6.05

5.64

6.02

64853_at

AIDA

1.15

2.21

2.51

0.05

0.85

− 4.42

Axin interactor, dorsalization associated

64853.00

ENSG00000186063

4.41

2.58

3.68

4.84

4.63

4.64

100462981_at

MTRNR2L2

1.15

2.21

2.64

0.04

0.85

− 4.40

MT-RNR2-like 2

100462981.00

ENSG00000269028

2.95

2.61

3.15

3.89

3.31

4.95

100379296_at

RNY4P13

1.14

2.20

3.05

0.02

0.85

− 4.37

RNA, Ro-associated Y4 pseudogene 13

100379296.00

NA

3.42

3.02

3.47

4.06

4.02

5.24

100873920_at

NHS-AS1

1.12

2.17

4.52

0.00

0.85

− 4.28

NHS antisense RNA 1

100873920.00

ENSG00000230020

3.29

2.94

3.06

3.81

4.57

4.27

340527_at

NHSL2

1.11

2.16

3.27

0.02

0.85

− 4.35

NHS like 2

340527.00

ENSG00000204131

4.91

4.01

4.04

5.86

5.05

5.38

7857_at

SCG2

1.10

2.15

3.01

0.02

0.85

− 4.37

Secretogranin II

7857.00

ENSG00000171951

4.11

3.41

4.48

5.64

4.83

4.84

503582_at

ARGFX

1.10

2.14

2.84

0.03

0.85

− 4.39

Arginine-fifty homeobox

503582.00

ENSG00000186103

2.98

2.69

2.91

3.90

3.24

4.74

574494_at

MIR521-1

1.10

2.14

2.91

0.03

0.85

− 4.38

MicroRNA 521-1

574494.00

ENSG00000207634

3.23

3.03

3.58

3.92

4.03

5.17

26022_at

TMEM98

1.08

2.12

4.33

0.00

0.85

− 4.29

Transmembrane protein 98

26022.00

ENSG00000006042

4.10

3.42

3.55

4.73

4.57

5.03

343521_at

TCTEX1D4

1.08

2.11

5.33

0.00

0.85

− 4.25

Tctex1 domain containing 4

343521.00

ENSG00000188396

4.98

4.86

4.69

5.83

6.19

5.73

4919_at

ROR1

1.07

2.10

2.78

0.03

0.85

− 4.39

Receptor tyrosine kinase like orphan receptor 1

4919.00

ENSG00000185483

4.27

4.19

5.12

6.24

5.25

5.30

440910_at

LOC440910

1.07

2.09

5.58

0.00

0.85

− 4.24

Uncharacterized LOC440910

440910.00

ENSG00000231431

4.11

3.73

3.77

5.05

4.78

4.98

105373893_at

LOC105373893

1.06

2.09

3.87

0.01

0.85

− 4.31

Uncharacterized LOC105373893

105373893.00

NA

2.54

3.11

3.03

3.60

4.36

3.91

105375249_at

LOC105375249

1.06

2.08

2.92

0.03

0.85

− 4.38

Uncharacterized LOC105375249

105375249.00

NA

3.06

2.60

2.85

3.12

4.33

4.23

84973_at

SNHG7

1.03

2.05

2.97

0.02

0.85

− 4.37

Small nucleolar RNA host gene 7

84973.00

ENSG00000233016

4.84

4.29

4.02

5.62

4.82

5.81

400728_at

FAM87B

1.03

2.04

3.33

0.02

0.85

− 4.35

Family with sequence similarity 87 member B

400728.00

ENSG00000177757

4.65

4.11

4.01

5.48

4.76

5.63

283685_at

GOLGA6L2

1.03

2.04

2.49

0.05

0.85

− 4.42

Golgin A6 family-like 2

283685.00

ENSG00000174450

4.22

4.06

4.06

4.52

4.84

6.07

9376_at

SLC22A8

1.01

2.02

3.32

0.02

0.85

− 4.35

Solute carrier family 22 member 8

9376.00

ENSG00000149452

3.30

3.43

3.29

4.09

3.97

5.00

9787_at

DLGAP5

− 1.00

− 2.00

− 2.66

0.04

0.85

− 4.40

DLG associated protein 5

9787.00

ENSG00000126787

5.91

5.43

4.60

4.59

4.40

3.95

5709_at

PSMD3

− 1.00

− 2.00

− 3.12

0.02

0.85

− 4.36

Proteasome 26S subunit, non-ATPase 3

5709.00

ENSG00000108344

6.23

6.90

7.03

5.88

6.05

5.23

5154_at

PDGFA

− 1.00

− 2.00

− 3.42

0.01

0.85

− 4.34

Platelet derived growth factor subunit A

5154.00

ENSG00000197461

5.01

6.02

5.81

4.54

4.60

4.69

163050_at

ZNF564

− 1.00

− 2.00

− 3.74

0.01

0.85

− 4.32

Zinc finger protein 564

163050.00

ENSG00000249709

5.69

6.30

6.20

4.67

5.30

5.22

7405_at

UVRAG

− 1.00

− 2.01

− 2.59

0.04

0.85

− 4.41

UV radiation resistance associated

7405.00

ENSG00000198382

6.49

7.01

7.35

6.44

6.17

5.23

283624_at

LINC00641

− 1.01

− 2.01

− 3.15

0.02

0.85

− 4.36

Long intergenic non-protein coding RNA 641

283624.00

ENSG00000258441

5.99

6.25

6.36

5.41

5.63

4.55

3931_at

LCAT

− 1.01

− 2.01

− 5.27

0.00

0.85

− 4.25

Lecithin-cholesterol acyltransferase

3931.00

ENSG00000213398

5.49

5.73

5.80

4.83

4.71

4.45

1318_at

SLC31A2

− 1.01

− 2.01

− 2.96

0.02

0.85

− 4.38

Solute carrier family 31 member 2

1318.00

ENSG00000136867

5.63

6.51

6.83

5.56

5.17

5.21

4771_at

NF2

− 1.01

− 2.02

− 2.70

0.03

0.85

− 4.40

Neurofibromin 2

4771.00

ENSG00000186575

5.54

6.07

5.83

5.22

5.18

4.00

54947_at

LPCAT2

− 1.01

− 2.02

− 2.51

0.05

0.85

− 4.42

Lysophosphatidylcholine acyltransferase 2

54947.00

ENSG00000087253

5.56

6.63

7.04

5.19

5.34

5.67

1978_at

EIF4EBP1

− 1.01

− 2.02

− 2.98

0.02

0.85

− 4.37

Eukaryotic translation initiation factor 4E binding protein 1

1978.00

ENSG00000187840

5.94

6.91

6.67

5.68

5.79

5.01

407043_at

MIR7-1

− 1.02

− 2.02

− 3.21

0.02

0.85

− 4.36

MicroRNA 7-1

407043.00

ENSG00000284179

4.77

5.46

5.67

4.54

3.86

4.46

8893_at

EIF2B5

− 1.02

− 2.03

− 2.44

0.05

0.85

− 4.42

Eukaryotic translation initiation factor 2B subunit epsilon

8893.00

ENSG00000145191

6.73

7.46

6.76

6.48

6.28

5.13

205564_at

SENP5

− 1.02

− 2.03

− 2.45

0.05

0.85

− 4.42

SUMO1/sentrin specific peptidase 5

205564.00

ENSG00000119231

6.72

6.75

7.15

6.53

6.06

4.98

2305_at

FOXM1

− 1.02

− 2.03

− 2.84

0.03

0.85

− 4.39

Forkhead box M1

2305.00

ENSG00000111206

5.61

5.60

5.15

4.64

4.96

3.71

113263_at

GLCCI1

− 1.02

− 2.03

− 2.65

0.04

0.85

− 4.40

Glucocorticoid induced 1

113263.00

ENSG00000106415

6.15

6.57

6.53

6.11

5.41

4.66

2030_at

SLC29A1

− 1.03

− 2.04

− 2.60

0.04

0.85

− 4.41

Solute carrier family 29 member 1 (Augustine blood group)

2030.00

ENSG00000112759

5.22

6.50

6.64

5.02

5.06

5.20

6660_at

SOX5

− 1.03

− 2.04

− 4.88

0.00

0.85

− 4.27

SRY-box 5

6660.00

ENSG00000134532

4.32

3.94

4.54

3.13

3.33

3.24

144100_at

PLEKHA7

− 1.03

− 2.04

− 2.57

0.04

0.85

− 4.41

Pleckstrin homology domain containing A7

144100.00

ENSG00000166689

3.85

5.38

4.81

3.67

3.85

3.44

23248_at

RPRD2

− 1.03

− 2.04

− 2.45

0.05

0.85

− 4.42

Regulation of nuclear pre-mRNA domain containing 2

23248.00

ENSG00000163125

6.94

7.36

7.59

6.80

6.62

5.38

26273_at

FBXO3

− 1.03

− 2.05

− 3.22

0.02

0.85

− 4.35

F-box protein 3

26273.00

ENSG00000110429

5.28

6.10

6.40

5.06

4.69

4.94

57037_at

ANKMY2

− 1.03

− 2.05

− 2.84

0.03

0.85

− 4.39

Ankyrin repeat and MYND domain containing 2

57037.00

ENSG00000106524

5.45

6.12

5.33

5.19

4.55

4.06

9701_at

PPP6R2

− 1.04

− 2.05

− 2.88

0.03

0.85

− 4.38

Protein phosphatase 6 regulatory subunit 2

9701.00

ENSG00000100239

5.03

5.51

5.22

4.64

4.56

3.46

10564_at

ARFGEF2

− 1.04

− 2.05

− 2.46

0.05

0.85

− 4.42

ADP ribosylation factor guanine nucleotide exchange factor 2

10564.00

ENSG00000124198

7.10

7.70

7.10

6.75

6.66

5.37

79005_at

SCNM1

− 1.04

− 2.06

− 3.37

0.01

0.85

− 4.34

Sodium channel modifier 1

79005.00

ENSG00000163156

4.53

4.80

5.40

4.27

3.81

3.54

6558_at

SLC12A2

− 1.04

− 2.06

− 2.88

0.03

0.85

− 4.38

Solute carrier family 12 member 2

6558.00

ENSG00000064651

7.47

8.24

7.42

7.15

6.77

6.09

377677_at

CA13

− 1.05

− 2.06

− 3.02

0.02

0.85

− 4.37

Carbonic anhydrase 13

377677.00

ENSG00000185015

3.82

4.88

4.77

3.82

3.32

3.19

10678_at

B3GNT2

− 1.05

− 2.07

− 5.23

0.00

0.85

− 4.25

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2

10678.00

ENSG00000170340

6.95

7.17

7.39

6.29

5.94

6.15

6641_at

SNTB1

− 1.05

− 2.07

− 2.91

0.03

0.85

− 4.38

syntrophin beta 1

6641.00

ENSG00000172164

6.23

7.02

7.18

5.99

6.09

5.19

51050_at

PI15

− 1.06

− 2.08

− 3.28

0.02

0.85

− 4.35

Peptidase inhibitor 15

51050.00

ENSG00000137558

4.70

3.74

3.81

2.77

2.96

3.35

222068_at

TMED4

− 1.06

− 2.08

− 2.62

0.04

0.85

− 4.41

Transmembrane p24 trafficking protein 4

222068.00

ENSG00000158604

6.22

6.92

6.84

6.17

5.82

4.81

1719_at

DHFR

− 1.06

− 2.08

− 2.82

0.03

0.85

− 4.39

Dihydrofolate reductase

1719.00

ENSG00000228716

4.72

5.34

5.88

4.73

4.22

3.81

51203_at

NUSAP1

− 1.06

− 2.09

− 2.70

0.03

0.85

− 4.40

Nucleolar and spindle associated protein 1

51203.00

ENSG00000137804

6.15

5.52

5.25

4.53

5.23

3.97

6217_at

RPS16

− 1.06

− 2.09

− 2.75

0.03

0.85

− 4.39

Ribosomal protein S16

6217.00

ENSG00000105193

8.53

9.00

9.28

8.50

7.94

7.17

28960_at

DCPS

− 1.07

− 2.10

− 2.51

0.05

0.85

− 4.42

Decapping enzyme, scavenger

28960.00

ENSG00000110063

5.10

6.58

5.59

4.75

5.06

4.25

9929_at

JOSD1

− 1.07

− 2.10

− 2.52

0.04

0.85

− 4.42

Josephin domain containing 1

9929.00

ENSG00000100221

6.81

7.41

7.05

6.93

5.64

5.48

54534_at

MRPL50

− 1.07

− 2.10

− 2.90

0.03

0.85

− 4.38

Mitochondrial ribosomal protein L50

54534.00

ENSG00000136897

5.55

6.48

6.67

5.08

5.61

4.80

51706_at

CYB5R1

− 1.08

− 2.11

− 2.67

0.04

0.85

− 4.40

Cytochrome b5 reductase 1

51706.00

ENSG00000159348

5.42

5.82

6.36

4.62

5.51

4.24

6615_at

SNAI1

− 1.08

− 2.11

− 4.82

0.00

0.85

− 4.27

Snail family transcriptional repressor 1

6615.00

ENSG00000124216

5.55

5.85

5.80

4.36

4.62

4.99

1063_at

CENPF

− 1.08

− 2.12

− 3.03

0.02

0.85

− 4.37

Centromere protein F

1063.00

ENSG00000117724

7.15

6.27

6.93

5.82

6.15

5.12

5832_at

ALDH18A1

− 1.08

− 2.12

− 2.73

0.03

0.85

− 4.40

Aldehyde dehydrogenase 18 family member A1

5832.00

ENSG00000059573

6.94

7.26

7.20

6.51

6.48

5.16

116092_at

DNTTIP1

− 1.09

− 2.12

− 2.57

0.04

0.85

− 4.41

Deoxynucleotidyltransferase terminal interacting protein 1

116092.00

ENSG00000101457

5.89

6.68

6.59

5.61

5.82

4.47

6241_at

RRM2

− 1.10

− 2.14

− 2.83

0.03

0.85

− 4.39

Ribonucleotide reductase regulatory subunit M2

6241.00

ENSG00000171848

7.05

6.78

5.62

5.47

5.24

5.44

54764_at

ZRANB1

− 1.10

− 2.14

− 3.01

0.02

0.85

− 4.37

Zinc finger RANBP2-type containing 1

54764.00

ENSG00000019995

7.41

8.66

7.86

7.18

6.91

6.54

50_at

ACO2

− 1.10

− 2.14

− 2.43

0.05

0.85

− 4.43

Aconitase 2

50.00

ENSG00000100412

4.95

6.14

5.36

4.01

5.18

3.97

84546_at

SNORD35B

− 1.10

− 2.15

− 2.56

0.04

0.85

− 4.41

Small nucleolar RNA, C/D box 35B

84546.00

ENSG00000200530

5.69

5.74

6.57

4.42

5.71

4.55

677845_at

SNORA79

− 1.11

− 2.15

− 2.50

0.05

0.85

− 4.42

Small nucleolar RNA, H/ACA box 79

677845.00

ENSG00000221303

4.99

6.70

5.51

4.76

4.70

4.42

54700_at

RRN3

− 1.11

− 2.16

− 2.52

0.04

0.85

− 4.42

RRN3 homolog, RNA polymerase I transcription factor

54700.00

ENSG00000085721, ENSG00000278494

5.79

5.48

5.91

5.61

4.19

4.05

56907_at

SPIRE1

− 1.11

− 2.17

− 3.21

0.02

0.85

− 4.35

Spire type actin nucleation factor 1

56907.00

ENSG00000134278

6.98

7.96

7.50

6.63

6.63

5.83

1739_at

DLG1

− 1.11

− 2.17

− 3.42

0.01

0.85

− 4.34

Discs large MAGUK scaffold protein 1

1739.00

ENSG00000075711

6.80

7.23

7.18

6.51

6.01

5.36

9991_at

PTBP3

− 1.12

− 2.17

− 2.96

0.02

0.85

− 4.38

Polypyrimidine tract binding protein 3

9991.00

ENSG00000119314

8.29

9.03

8.69

7.97

7.88

6.81

54512_at

EXOSC4

− 1.12

− 2.17

− 2.89

0.03

0.85

− 4.38

Exosome component 4

54512.00

ENSG00000178896

6.25

7.39

6.94

5.57

6.31

5.35

56910_at

STARD7

− 1.12

− 2.17

− 2.79

0.03

0.85

− 4.39

StAR related lipid transfer domain containing 7

56910.00

ENSG00000084090

8.17

8.42

9.00

7.59

7.98

6.66

5894_at

RAF1

− 1.12

− 2.17

− 2.62

0.04

0.85

− 4.41

Raf-1 proto-oncogene, serine/threonine kinase

5894.00

ENSG00000132155

7.08

7.18

7.55

6.44

6.79

5.22

3099_at

HK2

− 1.12

− 2.18

− 2.80

0.03

0.85

− 4.39

Hexokinase 2

3099.00

ENSG00000159399

6.52

7.97

7.18

6.28

6.31

5.72

1017_at

CDK2

− 1.13

− 2.18

− 2.60

0.04

0.85

− 4.41

Cyclin dependent kinase 2

1017.00

ENSG00000123374

6.47

7.67

7.78

5.95

6.73

5.86

9388_at

LIPG

− 1.13

− 2.19

− 2.82

0.03

0.85

− 4.39

Lipase G, endothelial type

9388.00

ENSG00000101670

4.66

6.09

5.53

4.62

4.32

3.94

100128398_at

LOC100128398

− 1.14

− 2.20

− 2.82

0.03

0.85

− 4.39

Uncharacterized LOC100128398

100128398.00

ENSG00000176593

4.70

4.73

5.99

4.23

4.13

3.65

8714_at

ABCC3

− 1.14

− 2.21

− 2.45

0.05

0.85

− 4.42

ATP binding cassette subfamily C member 3

8714.00

ENSG00000108846

6.34

7.36

7.00

6.03

6.39

4.86

64866_at

CDCP1

− 1.15

− 2.22

− 2.46

0.05

0.85

− 4.42

CUB domain containing protein 1

64866.00

ENSG00000163814

7.31

8.23

7.10

7.00

6.62

5.57

2673_at

GFPT1

− 1.15

− 2.23

− 2.86

0.03

0.85

− 4.38

Glutamine--fructose-6-phosphate transaminase 1

2673.00

ENSG00000198380

7.65

8.48

7.99

7.48

7.05

6.13

6376_at

CX3CL1

− 1.16

− 2.23

− 2.48

0.05

0.85

− 4.42

C-X3-C motif chemokine ligand 1

6376.00

ENSG00000006210

5.36

6.55

6.82

4.74

5.71

4.81

116113_at

FOXP4

− 1.16

− 2.24

− 3.51

0.01

0.85

− 4.33

Forkhead box P4

116113.00

ENSG00000137166

5.23

6.44

5.95

4.53

4.84

4.78

203413_at

CT83

− 1.16

− 2.24

− 2.49

0.05

0.85

− 4.42

Cancer/testis antigen 83

203413.00

ENSG00000204019

4.95

6.72

5.25

4.50

4.48

4.45

8503_at

PIK3R3

− 1.17

− 2.25

− 2.52

0.04

0.85

− 4.42

Phosphoinositide-3-kinase regulatory subunit 3

8503.00

ENSG00000117461, ENSG00000278139

6.13

7.36

5.60

5.48

5.17

4.93

22992_at

KDM2A

− 1.17

− 2.25

− 2.51

0.04

0.85

− 4.42

Lysine demethylase 2A

22992.00

ENSG00000173120

8.13

8.42

8.27

7.76

7.52

6.03

55707_at

NECAP2

− 1.18

− 2.26

− 2.77

0.03

0.85

− 4.39

NECAP endocytosis associated 2

55707.00

ENSG00000157191

5.93

6.96

7.07

5.21

6.14

5.08

55227_at

LRRC1

− 1.18

− 2.26

− 2.74

0.03

0.85

− 4.39

Leucine rich repeat containing 1

55227.00

ENSG00000137269

3.60

5.28

4.36

3.44

3.21

3.05

8694_at

DGAT1

− 1.19

− 2.28

− 2.63

0.04

0.85

− 4.40

Diacylglycerol O-acyltransferase 1

8694.00

ENSG00000185000

5.46

6.59

7.05

5.26

5.54

4.74

64225_at

ATL2

− 1.19

− 2.28

− 3.39

0.01

0.85

− 4.34

Atlastin GTPase 2

64225.00

ENSG00000119787

5.73

6.75

6.41

5.31

5.42

4.61

6301_at

SARS

− 1.19

− 2.28

− 2.62

0.04

0.85

− 4.41

Seryl-tRNA synthetase

6301.00

ENSG00000031698

6.58

6.90

7.30

6.15

6.30

4.76

6536_at

SLC6A9

− 1.19

− 2.28

− 3.92

0.01

0.85

− 4.31

Solute carrier family 6 member 9

6536.00

ENSG00000196517

6.25

6.41

7.04

5.30

5.04

5.79

4494_at

MT1F

− 1.19

− 2.29

− 2.61

0.04

0.85

− 4.41

Metallothionein 1F

4494.00

ENSG00000198417

7.00

7.65

7.47

6.32

6.97

5.25

54069_at

MIS18A

− 1.20

− 2.29

− 3.11

0.02

0.85

− 4.36

MIS18 kinetochore protein A

54069.00

ENSG00000159055

6.46

7.26

6.78

6.34

5.50

5.06

139231_at

FAM199X

− 1.20

− 2.29

− 4.94

0.00

0.85

− 4.26

Family with sequence similarity 199, X-linked

139231.00

ENSG00000123575

6.30

6.70

6.83

5.73

5.35

5.14

81502_at

HM13

− 1.20

− 2.30

− 2.64

0.04

0.85

− 4.40

Histocompatibility minor 13

81502.00

ENSG00000101294

6.54

6.81

7.20

6.04

6.24

4.66

81875_at

ISG20L2

− 1.20

− 2.30

− 2.49

0.05

0.85

− 4.42

Interferon stimulated exonuclease gene 20 like 2

81875.00

ENSG00000143319

6.63

6.70

7.71

6.03

6.46

4.94

10040_at

TOM1L1

− 1.22

− 2.32

− 2.98

0.02

0.85

− 4.37

Target of myb1 like 1 membrane trafficking protein

10040.00

ENSG00000141198

6.21

7.28

5.96

5.74

5.08

4.99

440138_at

ALG11

− 1.22

− 2.33

− 2.47

0.05

0.85

− 4.42

ALG11, alpha-1,2-mannosyltransferase

440138.00

ENSG00000253710

6.85

6.96

7.14

6.24

6.43

4.62

57669_at

EPB41L5

− 1.22

− 2.33

− 3.05

0.02

0.85

− 4.37

Erythrocyte membrane protein band 4.1 like 5

57669.00

ENSG00000115109

5.94

6.75

6.66

5.73

5.48

4.48

2120_at

ETV6

− 1.23

− 2.34

− 2.75

0.03

0.85

− 4.39

ETS variant 6

2120.00

ENSG00000139083

6.38

7.66

7.03

6.26

6.06

5.07

85461_at

TANC1

− 1.24

− 2.36

− 2.81

0.03

0.85

− 4.39

Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1

85461.00

ENSG00000115183

6.36

7.37

6.29

5.86

5.76

4.69

127544_at

RNF19B

− 1.24

− 2.36

− 3.13

0.02

0.85

− 4.36

Ring finger protein 19B

127544.00

ENSG00000116514

5.77

6.76

6.27

5.32

5.44

4.33

8351_at

HIST1H3D

− 1.24

− 2.36

− 2.71

0.03

0.85

− 4.40

Histone cluster 1 H3 family member d

8351.00

ENSG00000197409

6.54

6.61

7.43

6.39

4.83

5.65

2762_at

GMDS

− 1.25

− 2.38

− 2.97

0.02

0.85

− 4.37

GDP-mannose 4,6-dehydratase

2762.00

ENSG00000112699

5.64

6.19

6.75

5.17

5.43

4.22

55298_at

RNF121

− 1.25

− 2.39

− 2.52

0.04

0.85

− 4.42

Ring finger protein 121

55298.00

ENSG00000137522

4.68

5.17

5.44

4.28

4.49

2.76

6809_at

STX3

− 1.26

− 2.39

− 3.23

0.02

0.85

− 4.35

Syntaxin 3

6809.00

ENSG00000166900

6.03

6.89

7.18

5.46

5.92

4.94

51514_at

DTL

− 1.26

− 2.39

− 3.24

0.02

0.85

− 4.35

Denticleless E3 ubiquitin protein ligase homolog

51514.00

ENSG00000143476

6.44

5.08

5.58

4.27

4.83

4.22

1903_at

S1PR3

− 1.26

− 2.40

− 3.11

0.02

0.85

− 4.36

Sphingosine-1-phosphate receptor 3

1903.00

ENSG00000213694

5.47

5.96

6.54

5.20

4.95

4.04

100288069_at

LOC100288069

− 1.27

− 2.40

− 3.58

0.01

0.85

− 4.33

Uncharacterized LOC100288069

100288069.00

NA

5.03

5.98

5.56

4.54

3.69

4.55

221079_at

ARL5B

− 1.27

− 2.41

− 2.86

0.03

0.85

− 4.38

ADP ribosylation factor like GTPase 5B

221079.00

ENSG00000165997

6.61

8.07

7.89

6.46

6.53

5.78

72_at

ACTG2

− 1.27

− 2.41

− 3.35

0.01

0.85

− 4.35

Actin, gamma 2, smooth muscle, enteric

72.00

ENSG00000163017

3.76

4.44

3.10

2.36

2.87

2.25

23636_at

NUP62

− 1.27

− 2.41

− 2.97

0.02

0.85

− 4.37

Nucleoporin 62

23636.00

ENSG00000213024

5.99

6.14

7.01

5.40

5.58

4.35

57154_at

SMURF1

− 1.28

− 2.43

− 2.97

0.02

0.85

− 4.37

SMAD specific E3 ubiquitin protein ligase 1

57154.00

ENSG00000198742, ENSG00000284126

5.85

6.76

5.71

5.32

5.08

4.08

9055_at

PRC1

− 1.28

− 2.43

− 4.05

0.01

0.85

− 4.30

Protein regulator of cytokinesis 1

9055.00

ENSG00000198901

7.49

7.99

7.11

6.27

6.64

5.83

201475_at

RAB12

− 1.28

− 2.43

− 2.88

0.03

0.85

− 4.38

RAB12, member RAS oncogene family

201475.00

ENSG00000206418

7.79

8.27

7.74

6.98

7.29

5.68

11123_at

RCAN3

− 1.30

− 2.46

− 2.97

0.02

0.85

− 4.37

RCAN family member 3

11123.00

ENSG00000117602

5.67

7.23

6.70

5.67

5.10

4.94

10276_at

NET1

− 1.30

− 2.46

− 3.19

0.02

0.85

− 4.36

Neuroepithelial cell transforming 1

10276.00

ENSG00000173848

6.53

7.72

6.78

5.85

6.14

5.14

79065_at

ATG9A

− 1.30

− 2.47

− 3.05

0.02

0.85

− 4.37

Autophagy related 9A

79065.00

ENSG00000198925

6.34

7.11

7.46

5.94

6.12

4.93

890_at

CCNA2

− 1.31

− 2.47

− 2.50

0.05

0.85

− 4.42

cyclin A2

890.00

ENSG00000145386

6.91

6.72

5.52

5.40

5.63

4.20

100506658_at

OCLN

− 1.31

− 2.48

− 3.25

0.02

0.85

− 4.35

occludin

100506658.00

ENSG00000197822, ENSG00000273814

3.76

5.05

5.21

3.44

3.42

3.24

5209_at

PFKFB3

− 1.31

− 2.49

− 2.46

0.05

0.85

− 4.42

6-Phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

5209.00

ENSG00000170525

4.95

5.48

6.21

4.44

5.01

3.25

51361_at

HOOK1

− 1.31

− 2.49

− 2.65

0.04

0.85

− 4.40

Hook microtubule tethering protein 1

51361.00

ENSG00000134709

3.25

4.78

5.06

2.77

3.04

3.34

701_at

BUB1B

− 1.32

− 2.50

− 5.79

0.00

0.85

− 4.24

BUB1 mitotic checkpoint serine/threonine kinase B

701.00

ENSG00000156970

6.46

6.40

5.91

5.01

4.70

5.10

85406_at

DNAJC14

− 1.33

− 2.52

− 3.14

0.02

0.85

− 4.36

DnaJ heat shock protein family (Hsp40) member C14

85406.00

ENSG00000135392

5.91

6.24

6.27

5.19

5.38

3.85

6907_at

TBL1X

− 1.34

− 2.53

− 3.73

0.01

0.85

− 4.32

Transducin beta like 1 X-linked

6907.00

ENSG00000101849

4.83

5.79

4.97

4.30

3.90

3.38

3728_at

JUP

− 1.35

− 2.54

− 2.69

0.04

0.85

− 4.40

Junction plakoglobin

3728.00

ENSG00000173801

5.39

7.24

6.88

4.82

5.41

5.25

7153_at

TOP2A

− 1.35

− 2.55

− 2.47

0.05

0.85

− 4.42

DNA topoisomerase II alpha

7153.00

ENSG00000131747

8.13

6.98

7.44

6.45

6.96

5.08

56888_at

KCMF1

− 1.35

− 2.56

− 2.57

0.04

0.85

− 4.41

Potassium channel modulatory factor 1

56888.00

ENSG00000176407

7.45

8.10

8.39

7.40

6.94

5.54

112616_at

CMTM7

− 1.35

− 2.56

− 2.58

0.04

0.85

− 4.41

CKLF like MARVEL transmembrane domain containing 7

112616.00

ENSG00000153551

5.31

7.09

6.28

4.46

5.58

4.57

4318_at

MMP9

− 1.36

− 2.57

− 2.86

0.03

0.85

− 4.38

Matrix metallopeptidase 9

4318.00

ENSG00000100985

5.69

6.61

7.44

5.56

5.32

4.77

57535_at

KIAA1324

− 1.36

− 2.57

− 3.51

0.01

0.85

− 4.33

KIAA1324

57535.00

ENSG00000116299

5.17

6.65

5.85

4.34

4.75

4.49

57162_at

PELI1

− 1.38

− 2.60

− 2.82

0.03

0.85

− 4.39

Pellino E3 ubiquitin protein ligase 1

57162.00

ENSG00000197329

5.32

7.19

6.58

5.08

5.22

4.64

9654_at

TTLL4

− 1.38

− 2.60

− 2.48

0.05

0.85

− 4.42

Tubulin tyrosine ligase like 4

9654.00

ENSG00000135912

6.28

7.67

8.29

6.19

6.45

5.46

493856_at

CISD2

− 1.39

− 2.61

− 4.51

0.00

0.85

− 4.28

CDGSH iron sulfur domain 2

493856.00

ENSG00000145354

6.53

7.52

7.37

6.00

5.65

5.61

1857_at

DVL3

− 1.39

− 2.62

− 2.90

0.03

0.85

− 4.38

Dishevelled segment polarity protein 3

1857.00

ENSG00000161202

7.03

8.07

7.79

6.77

6.66

5.30

102723739_at

LOC102723739

− 1.39

− 2.63

− 2.66

0.04

0.85

− 4.40

Uncharacterized LOC102723739

102723739.00

NA

3.14

4.09

5.29

2.79

2.80

2.75

91452_at

ACBD5

− 1.40

− 2.63

− 2.44

0.05

0.85

− 4.42

Acyl-CoA binding domain containing 5

91452.00

ENSG00000107897

5.59

7.02

5.87

5.24

5.35

3.71

79622_at

SNRNP25

− 1.41

− 2.66

− 3.19

0.02

0.85

− 4.36

Small nuclear ribonucleoprotein U11/U12 subunit 25

79622.00

ENSG00000161981

5.44

6.73

6.20

4.54

5.39

4.20

200634_at

KRTCAP3

− 1.41

− 2.66

− 2.79

0.03

0.85

− 4.39

Keratinocyte associated protein 3

200634.00

ENSG00000157992

5.96

7.90

6.93

5.59

5.84

5.12

6533_at

SLC6A6

− 1.41

− 2.66

− 2.61

0.04

0.85

− 4.41

Solute carrier family 6 member 6

6533.00

ENSG00000131389

6.44

7.15

8.29

5.87

6.50

5.28

3419_at

IDH3A

− 1.41

− 2.67

− 2.56

0.04

0.85

− 4.41

Isocitrate dehydrogenase 3 (NAD(+)) alpha

3419.00

ENSG00000166411

6.50

7.78

6.68

6.24

5.95

4.54

85236_at

HIST1H2BK

− 1.42

− 2.67

− 2.84

0.03

0.85

− 4.39

Histone cluster 1 H2B family member k

85236.00

ENSG00000197903

8.26

7.61

8.77

7.17

7.39

5.83

4133_at

MAP2

− 1.42

− 2.68

− 2.67

0.04

0.85

− 4.40

Microtubule associated protein 2

4133.00

ENSG00000078018

5.20

7.30

5.83

4.86

4.76

4.45

10809_at

STARD10

− 1.42

− 2.68

− 2.82

0.03

0.85

− 4.39

StAR related lipid transfer domain containing 10

10809.00

ENSG00000214530

5.74

7.20

6.04

4.20

4.94

5.57

440278_at

CATSPER2P1

− 1.43

− 2.70

− 3.43

0.01

0.85

− 4.34

Cation channel sperm associated 2 pseudogene 1

440278.00

ENSG00000205771

4.41

5.58

4.78

4.17

3.16

3.15

8985_at

PLOD3

− 1.46

− 2.74

− 3.09

0.02

0.85

− 4.36

Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3

8985.00

ENSG00000106397

7.17

8.09

8.06

6.92

6.63

5.41

7978_at

MTERF1

− 1.46

− 2.74

− 3.13

0.02

0.85

− 4.36

Mitochondrial transcription termination factor 1

7978.00

ENSG00000127989

5.75

5.78

5.99

4.98

3.31

4.87

146223_at

CMTM4

− 1.47

− 2.78

− 4.22

0.01

0.85

− 4.29

CKLF like MARVEL transmembrane domain containing 4

146223.00

ENSG00000183723

6.79

7.29

6.90

5.74

6.00

4.82

64426_at

SUDS3

− 1.48

− 2.78

− 3.91

0.01

0.85

− 4.31

SDS3 homolog, SIN3A corepressor complex component

64426.00

ENSG00000111707

5.36

5.85

6.04

4.52

4.77

3.53

57530_at

CGN

− 1.48

− 2.79

− 2.47

0.05

0.85

− 4.42

Cingulin

57530.00

ENSG00000143375

3.80

5.94

5.36

2.96

4.09

3.61

6271_at

S100A1

− 1.48

− 2.79

− 2.43

0.05

0.85

− 4.42

S100 calcium binding protein A1

6271.00

ENSG00000160678

4.99

7.06

7.09

4.48

4.99

5.24

375035_at

SFT2D2

− 1.49

− 2.81

− 2.72

0.03

0.85

− 4.40

SFT2 domain containing 2

375035.00

ENSG00000213064

8.02

8.63

9.94

7.04

8.03

7.05

158586_at

ZXDB

− 1.50

− 2.82

− 2.98

0.02

0.85

− 4.37

Zinc finger, X-linked, duplicated B

158586.00

ENSG00000198455

6.61

7.35

6.90

6.50

5.24

4.62

9368_at

SLC9A3R1

− 1.50

− 2.82

− 3.06

0.02

0.85

− 4.37

SLC9A3 regulator 1

9368.00

ENSG00000109062

6.51

8.26

7.59

5.91

6.44

5.52

6398_at

SECTM1

− 1.50

− 2.83

− 2.51

0.04

0.85

− 4.42

Secreted and transmembrane 1

6398.00

ENSG00000141574

5.80

6.88

8.25

5.56

5.25

5.61

1717_at

DHCR7

− 1.51

− 2.84

− 2.91

0.03

0.85

− 4.38

7-Dehydrocholesterol reductase

1717.00

ENSG00000172893

6.16

8.01

7.10

6.15

5.50

5.10

7097_at

TLR2

− 1.51

− 2.84

− 3.05

0.02

0.85

− 4.37

Toll like receptor 2

7097.00

ENSG00000137462

5.32

6.65

6.31

3.74

5.13

4.89

94039_at

ZNF101

− 1.53

− 2.90

− 2.44

0.05

0.85

− 4.42

Zinc finger protein 101

94039.00

ENSG00000181896

4.28

6.82

5.07

3.94

3.99

3.64

22974_at

TPX2

− 1.54

− 2.91

− 3.85

0.01

0.85

− 4.31

TPX2, microtubule nucleation factor

22974.00

ENSG00000088325

6.77

6.86

6.44

5.59

5.59

4.27

1838_at

DTNB

− 1.55

− 2.92

− 3.70

0.01

0.85

− 4.32

Dystrobrevin beta

1838.00

ENSG00000138101

4.93

5.76

6.59

4.31

4.17

4.17

51176_at

LEF1

− 1.55

− 2.92

− 3.59

0.01

0.85

− 4.33

Lymphoid enhancer binding factor 1

51176.00

ENSG00000138795

4.60

4.50

5.54

4.01

2.71

3.28

10207_at

PATJ

− 1.55

− 2.94

− 3.54

0.01

0.85

− 4.33

PATJ, crumbs cell polarity complex component

10207.00

ENSG00000132849

5.44

7.03

6.29

5.14

4.59

4.38

29028_at

ATAD2

− 1.56

− 2.95

− 3.11

0.02

0.85

− 4.36

ATPase family, AAA domain containing 2

29028.00

ENSG00000156802

6.59

6.84

6.37

5.91

5.26

3.94

4301_at

AFDN

− 1.58

− 2.99

− 3.08

0.02

0.85

− 4.37

Afadin, adherens junction formation factor

4301.00

ENSG00000130396

7.28

8.54

7.96

6.92

6.74

5.38

3838_at

KPNA2

− 1.58

− 2.99

− 2.62

0.04

0.85

− 4.41

Karyopherin subunit alpha 2

3838.00

ENSG00000182481

7.53

7.88

7.85

7.19

6.54

4.78

79837_at

PIP4K2C

− 1.58

− 2.99

− 2.43

0.05

0.85

− 4.42

Phosphatidylinositol-5-phosphate 4-kinase type 2 gamma

79837.00

ENSG00000166908

5.02

7.63

6.73

4.54

5.18

4.91

3691_at

ITGB4

− 1.59

− 3.01

− 3.59

0.01

0.85

− 4.33

Integrin subunit beta 4

3691.00

ENSG00000132470

4.89

6.44

6.02

3.86

4.64

4.08

8342_at

HIST1H2BM

− 1.59

− 3.02

− 7.74

0.00

0.85

− 4.21

Histone cluster 1 H2B family member m

8342.00

ENSG00000273703

6.08

6.15

6.49

4.88

4.55

4.50

1317_at

SLC31A1

− 1.60

− 3.03

− 2.62

0.04

0.85

− 4.41

Solute carrier family 31 member 1

1317.00

ENSG00000136868

7.61

8.97

8.40

7.02

7.62

5.54

360019_at

KRT18P10

− 1.61

− 3.05

− 3.19

0.02

0.85

− 4.36

Keratin 18 pseudogene 10

360019.00

NA

3.49

5.09

3.33

2.02

2.32

2.73

388564_at

TMEM238

− 1.62

− 3.07

− 2.91

0.03

0.85

− 4.38

Transmembrane protein 238

388564.00

ENSG00000233493

5.09

6.52

7.12

5.18

4.36

4.34

4316_at

MMP7

− 1.62

− 3.07

− 2.79

0.03

0.85

− 4.39

Matrix metallopeptidase 7

4316.00

ENSG00000137673

6.90

8.39

6.73

6.19

6.15

4.82

27350_at

APOBEC3C

− 1.62

− 3.08

− 3.59

0.01

0.85

− 4.33

Apolipoprotein B mRNA editing enzyme catalytic subunit 3C

27350.00

ENSG00000244509

6.78

6.83

7.46

6.07

5.66

4.47

26578_at

OSTF1

− 1.62

− 3.08

− 2.59

0.04

0.85

− 4.41

Osteoclast stimulating factor 1

26578.00

ENSG00000134996

6.81

7.32

7.15

6.36

6.06

4.00

8424_at

BBOX1

− 1.62

− 3.08

− 2.43

0.05

0.85

− 4.43

Gamma-Butyrobetaine hydroxylase 1

8424.00

ENSG00000129151

3.19

4.73

5.98

2.95

3.10

2.97

56990_at

CDC42SE2

− 1.63

− 3.10

− 2.83

0.03

0.85

− 4.39

CDC42 small effector 2

56990.00

ENSG00000158985

6.36

6.43

6.68

5.77

5.28

3.52

27095_at

TRAPPC3

− 1.64

− 3.11

− 2.68

0.04

0.85

− 4.40

Trafficking protein particle complex 3

27095.00

ENSG00000054116

7.43

8.62

9.34

7.39

7.21

5.87

1672_at

DEFB1

− 1.64

− 3.12

− 2.76

0.03

0.85

− 4.39

Defensin beta 1

1672.00

ENSG00000164825

6.43

8.53

7.29

5.20

6.46

5.67

7045_at

TGFBI

− 1.65

− 3.13

− 2.51

0.04

0.85

− 4.42

Transforming growth factor beta induced

7045.00

ENSG00000120708

8.86

7.38

7.93

6.92

7.22

5.10

105374310_at

LOC105374310

− 1.65

− 3.15

− 3.11

0.02

0.85

− 4.36

Uncharacterized LOC105374310

105374310.00

NA

4.90

6.39

6.91

4.27

4.80

4.16

1836_at

SLC26A2

− 1.67

− 3.17

− 2.90

0.03

0.85

− 4.38

Solute carrier family 26 member 2

1836.00

ENSG00000155850

6.09

7.64

6.78

5.93

5.41

4.17

196_at

AHR

− 1.68

− 3.21

− 3.62

0.01

0.85

− 4.33

Aryl hydrocarbon receptor

196.00

ENSG00000106546

8.48

9.96

8.80

7.66

7.75

6.77

4233_at

MET

− 1.70

− 3.24

− 2.82

0.03

0.85

− 4.39

MET proto-oncogene, receptor tyrosine kinase

4233.00

ENSG00000105976

6.25

6.90

5.63

5.72

4.39

3.58

10652_at

YKT6

− 1.70

− 3.24

− 3.35

0.01

0.85

− 4.34

YKT6 v-SNARE homolog

10652.00

ENSG00000106636

6.29

7.03

7.09

5.77

5.51

4.03

5768_at

QSOX1

− 1.70

− 3.25

− 2.53

0.04

0.85

− 4.41

Quiescin sulfhydryl oxidase 1

5768.00

ENSG00000116260

5.27

7.66

7.06

5.27

5.40

4.22

93474_at

ZNF670

− 1.72

− 3.30

− 5.97

0.00

0.85

− 4.24

Zinc finger protein 670

93474.00

ENSG00000277462

4.16

4.70

4.86

3.29

2.65

2.61

7020_at

TFAP2A

− 1.74

− 3.34

− 2.58

0.04

0.85

− 4.41

Transcription factor AP-2 alpha

7020.00

ENSG00000137203

5.64

6.83

8.41

5.11

5.46

5.09

11221_at

DUSP10

− 1.74

− 3.34

− 3.52

0.01

0.85

− 4.33

Dual specificity phosphatase 10

11221.00

ENSG00000143507

7.27

7.36

8.15

6.18

6.53

4.85

56900_at

TMEM167B

− 1.75

− 3.36

− 2.51

0.04

0.85

− 4.42

Transmembrane protein 167B

56900.00

ENSG00000215717

6.05

7.34

7.33

5.78

5.98

3.71

5557_at

PRIM1

− 1.77

− 3.42

− 3.72

0.01

0.85

− 4.32

DNA primase subunit 1

5557.00

ENSG00000198056

5.69

6.34

5.89

5.24

3.85

3.52

5795_at

PTPRJ

− 1.78

− 3.45

− 2.69

0.04

0.85

− 4.40

Protein tyrosine phosphatase, receptor type J

5795.00

ENSG00000149177

5.39

8.03

6.45

4.69

5.31

4.51

79022_at

TMEM106C

− 1.79

− 3.46

− 2.53

0.04

0.85

− 4.41

Transmembrane protein 106C

79022.00

ENSG00000134291

5.41

7.66

6.77

5.50

5.25

3.73

481_at

ATP1B1

− 1.80

− 3.47

− 2.47

0.05

0.85

− 4.42

ATPase Na+/K+ transporting subunit beta 1

481.00

ENSG00000143153

7.64

10.31

8.18

6.69

7.58

6.48

105376171_at

LOC105376171

− 1.81

− 3.51

− 3.93

0.01

0.85

− 4.31

Uncharacterized LOC105376171

105376171.00

ENSG00000231521

5.55

6.06

6.77

5.09

4.15

3.71

283987_at

HID1

− 1.84

− 3.59

− 3.15

0.02

0.85

− 4.36

HID1 domain containing

283987.00

ENSG00000167861

5.14

7.50

6.41

4.34

4.84

4.34

1942_at

EFNA1

− 1.85

− 3.59

− 3.36

0.01

0.85

− 4.34

Ephrin A1

1942.00

ENSG00000169242

3.73

5.03

5.96

2.89

3.02

3.27

84844_at

PHF5A

− 1.85

− 3.60

− 2.79

0.03

0.85

− 4.39

PHD finger protein 5A

84844.00

ENSG00000100410

4.91

6.55

7.50

4.70

3.97

4.75

10653_at

SPINT2

− 1.86

− 3.63

− 2.56

0.04

0.85

− 4.41

Serine peptidase inhibitor, Kunitz type 2

10653.00

ENSG00000167642

5.07

7.84

6.95

4.08

5.09

5.10

100313770_at

MIR548K

− 1.87

− 3.66

− 2.88

0.03

0.85

− 4.38

MicroRNA 548k

100313770.00

ENSG00000221333

3.67

4.79

6.36

3.00

3.16

3.05

83481_at

EPPK1

− 1.90

− 3.73

− 2.96

0.02

0.85

− 4.38

Epiplakin 1

83481.00

ENSG00000261150

3.92

5.27

6.60

3.38

3.37

3.34

55971_at

BAIAP2L1

− 1.90

− 3.74

− 2.68

0.04

0.85

− 4.40

BAI1 associated protein 2 like 1

55971.00

ENSG00000006453

5.12

7.77

6.23

4.14

5.25

4.03

3675_at

ITGA3

− 1.91

− 3.75

− 2.69

0.03

0.85

− 4.40

Integrin subunit alpha 3

3675.00

ENSG00000005884

6.84

7.81

7.05

6.01

6.25

3.72

1545_at

CYP1B1

− 1.95

− 3.86

− 2.71

0.03

0.85

− 4.40

Cytochrome P450 family 1 subfamily B member 1

1545.00

ENSG00000138061

7.76

8.41

9.92

7.13

7.54

5.58

57153_at

SLC44A2

− 1.96

− 3.88

− 2.62

0.04

0.85

− 4.41

Solute carrier family 44 member 2

57153.00

ENSG00000129353

6.65

8.62

8.63

6.29

6.93

4.82

11009_at

IL24

− 1.96

− 3.90

− 2.95

0.02

0.85

− 4.38

Interleukin 24

11009.00

ENSG00000162892

6.61

7.42

7.13

4.36

6.63

4.28

6272_at

SORT1

− 1.99

− 3.97

− 2.78

0.03

0.85

− 4.39

Sortilin 1

6272.00

ENSG00000134243

5.51

7.42

7.93

5.07

5.70

4.12

6692_at

SPINT1

− 2.00

− 4.01

− 3.35

0.01

0.85

− 4.35

Serine peptidase inhibitor, Kunitz type 1

6692.00

ENSG00000166145

5.61

8.07

6.52

4.84

4.67

4.68

129642_at

MBOAT2

− 2.01

− 4.03

− 3.80

0.01

0.85

− 4.32

Membrane bound O-acyltransferase domain containing 2

129642.00

ENSG00000143797

6.45

7.14

6.80

5.33

5.43

3.59

1829_at

DSG2

− 2.01

− 4.04

− 3.59

0.01

0.85

− 4.33

Desmoglein 2

1829.00

ENSG00000046604

6.13

8.00

6.21

4.67

5.29

4.34

92421_at

CHMP4C

− 2.07

− 4.19

− 2.76

0.03

0.85

− 4.39

Charged multivesicular body protein 4C

92421.00

ENSG00000164695

4.82

7.95

6.36

4.17

4.22

4.54

219970_at

GLYATL2

− 2.07

− 4.19

− 5.74

0.00

0.85

− 4.24

Glycine-N-acyltransferase like 2

219970.00

ENSG00000156689

6.74

6.55

6.57

5.30

4.44

3.92

1366_at

CLDN7

− 2.10

− 4.30

− 3.20

0.02

0.85

− 4.36

Claudin 7

1366.00

ENSG00000181885

5.76

8.28

7.54

4.96

5.60

4.71

55041_at

PLEKHB2

− 2.12

− 4.34

− 2.52

0.04

0.85

− 4.42

Pleckstrin homology domain containing B2

55041.00

ENSG00000115762

5.98

7.53

7.36

5.85

5.63

3.04

337875_at

HIST2H2BA

− 2.16

− 4.47

− 3.17

0.02

0.85

− 4.36

Histone cluster 2 H2B family member a (pseudogene)

337875.00

NA

5.74

6.89

7.36

5.17

5.17

3.17

6768_at

ST14

− 2.18

− 4.53

− 2.65

0.04

0.85

− 4.40

Suppression of tumorigenicity 14

6768.00

ENSG00000149418

4.10

7.39

6.61

3.59

4.00

3.98

8140_at

SLC7A5

− 2.20

− 4.58

− 2.99

0.02

0.85

− 4.37

Solute carrier family 7 member 5

8140.00

ENSG00000103257

6.75

9.18

8.08

5.84

6.74

4.84

1824_at

DSC2

− 2.20

− 4.61

− 3.51

0.01

0.85

− 4.33

Desmocollin 2

1824.00

ENSG00000134755

7.20

9.00

8.68

6.43

6.77

5.07

200058_at

FLJ23867

− 2.20

− 4.61

− 3.11

0.02

0.85

− 4.36

Uncharacterized protein FLJ23867

200058.00

NA

6.24

9.21

8.00

5.63

5.62

5.59

51330_at

TNFRSF12A

− 2.28

− 4.86

− 2.71

0.03

0.85

− 4.40

TNF receptor superfamily member 12A

51330.00

ENSG00000006327

6.98

8.53

10.21

5.90

7.16

5.82

2517_at

FUCA1

− 2.31

− 4.97

− 2.64

0.04

0.85

− 4.40

alpha-L-Fucosidase 1

2517.00

ENSG00000179163

5.26

7.76

8.62

5.33

5.19

4.17

1832_at

DSP

− 2.34

− 5.06

− 6.25

0.00

0.85

− 4.23

Desmoplakin

1832.00

ENSG00000096696

7.04

8.21

8.17

5.74

5.56

5.11

1500_at

CTNND1

− 2.38

− 5.22

− 2.78

0.03

0.85

− 4.39

Catenin delta 1

1500.00

ENSG00000198561

6.60

9.08

8.82

5.74

7.01

4.60

55959_at

SULF2

− 2.39

− 5.24

− 3.21

0.02

0.85

− 4.36

Sulfatase 2

55959.00

ENSG00000196562

6.43

8.46

6.99

4.71

6.15

3.84

102723517_at

LOC102723517

− 2.42

− 5.34

− 2.87

0.03

0.85

− 4.38

Uncharacterized LOC102723517

102723517.00

ENSG00000234899

7.56

9.83

10.72

6.94

7.68

6.25

79679_at

VTCN1

− 2.42

− 5.36

− 2.75

0.03

0.85

− 4.39

V-set domain containing T-cell activation inhibitor 1

79679.00

ENSG00000134258

4.11

6.81

7.68

3.76

3.66

3.92

50848_at

F11R

− 2.45

− 5.45

− 2.56

0.04

0.85

− 4.41

F11 receptor

50848.00

ENSG00000158769

5.11

8.90

7.36

4.60

5.42

4.00

4071_at

TM4SF1

− 2.46

− 5.50

− 2.70

0.03

0.85

− 4.40

Transmembrane 4 L six family member 1

4071.00

ENSG00000169908

5.87

9.24

7.98

5.71

5.82

4.19

999_at

CDH1

− 2.46

− 5.50

− 3.13

0.02

0.85

− 4.36

Cadherin 1

999.00

ENSG00000039068

6.21

9.33

6.90

4.97

5.32

4.78

2568_at

GABRP

− 2.51

− 5.70

− 2.92

0.03

0.85

− 4.38

gamma-Aminobutyric acid type A receptor pi subunit

2568.00

ENSG00000094755

5.83

8.82

8.48

4.59

6.09

4.90

54845_at

ESRP1

− 2.56

− 5.91

− 2.58

0.04

0.85

− 4.41

Epithelial splicing regulatory protein 1

54845.00

ENSG00000104413

3.97

8.06

6.65

3.27

4.06

3.66

3655_at

ITGA6

− 2.58

− 5.97

− 2.73

0.03

0.85

− 4.40

Integrin subunit alpha 6

3655.00

ENSG00000091409

5.87

9.56

8.76

4.93

5.84

5.69

3854_at

KRT6B

− 2.61

− 6.11

− 2.62

0.04

0.85

− 4.41

Keratin 6B

3854.00

ENSG00000185479

9.02

9.60

9.42

8.23

7.64

4.34

3694_at

ITGB6

− 2.63

− 6.18

− 5.73

0.00

0.85

− 4.24

Integrin subunit beta 6

3694.00

ENSG00000115221

7.21

8.24

7.04

4.28

5.59

4.73

27075_at

TSPAN13

− 2.75

− 6.73

− 2.70

0.03

0.85

− 4.40

Tetraspanin 13

27075.00

ENSG00000106537

5.26

9.38

8.10

4.39

4.75

5.35

654319_at

SNORA5A

− 2.76

− 6.79

− 3.19

0.02

0.85

− 4.36

Small nucleolar RNA, H/ACA box 5A

654319.00

ENSG00000206838

3.56

6.90

6.28

3.32

2.69

2.45

8842_at

PROM1

− 2.76

− 6.79

− 2.56

0.04

0.85

− 4.41

Prominin 1

8842.00

ENSG00000007062

5.98

9.88

7.29

4.82

6.17

3.86

102723505_at

LINC02095

− 2.86

− 7.25

− 2.67

0.04

0.85

− 4.40

Long intergenic non-protein coding RNA 2095

102723505.00

ENSG00000228639

5.17

8.97

8.94

4.90

5.43

4.17

114569_at

MAL2

− 3.05

− 8.28

− 3.35

0.01

0.85

− 4.34

mal, T-cell differentiation protein 2 (gene/pseudogene)

114569.00

ENSG00000147676

7.95

10.23

9.52

6.32

7.65

4.58

938_at

CD24P4

− 3.29

− 9.81

− 3.13

0.02

0.85

− 4.36

CD24 molecule pseudogene 4

938.00

NA

6.48

7.89

7.12

3.49

6.16

1.96

105376425_at

LOC105376425

− 3.46

-11.03

− 3.40

0.01

0.85

− 4.34

Uncharacterized LOC105376425

105376425.00

NA

6.44

9.61

6.90

5.20

4.68

2.68

8364_at

HIST1H4C

− 3.63

-12.39

− 3.25

0.02

0.85

− 4.35

Histone cluster 1 H4 family member c

8364.00

ENSG00000197061

6.78

5.03

9.38

4.50

2.75

3.05

260436_at

FDCSP

− 4.42

-21.46

− 2.81

0.03

0.85

− 4.39

Follicular dendritic cell secreted protein

260436.00

ENSG00000181617

8.08

11.32

11.19

4.13

9.03

4.16

6279_at

S100A8

− 4.79

-27.66

− 3.93

0.01

0.85

− ρ4.31

S100 calcium binding protein A8

6279.00

ENSG00000143546

5.66

9.82

10.42

3.96

3.56

4.01

  1. BT133, BT134 and BT138 corresponds to three different TNBC patients