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Table 1 Overview of data files and data sets

From: Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

Label Name of data file/data set File types (extension) Data repository and identifier
DNA Sequences of Inbreds GBS sequencing Maize G2F (G × E) inbreds Sequence reads NCBI SRA PRJNA385022 [3] (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA385022)
2014 Field Season Phenotypic and Genotypic Data _readme.txt .txt CyVerse [9] (https://doi.org/10.7946/P2V888)
/a._2014_hybrid_phenotypic_data directory
_g2f_2014_hybrid_data_description.txt .txt
g2f_2014_hybrid_no_outliers.csv .csv
g2f_2014_hybrid_raw.csv .csv
/b._2014_gbs_data directory
_g2f_2014_gbs_data_description.txt .txt
g2f_2014_gbs_data.csv .csv
g2f_2014_zeagbsv27.imp.h5 .h5
g2f_2014_zeagbsv27.imp.h5.gz .gz
g2f_2014_zeagbsv27.raw.h5 .h5
g2f_2014_zeagbsv27.raw.h5.gz .gz
g2f_2014_zeagbsv27impv5hmp.txt.gz .gz
g2f_2014_zeagbsv27v5hmp.txt.gz .gz
/c._2014_weather_data directory
_g2f_2014_weather_data_description.txt .txt
g2f_2014_weather_calibrated.csv .csv
g2f_2014_weather_clean.csv .csv
/d._2014_inbred_phenotypic_data directory
_g2f_2014_inbred_data_description.txt .txt
g2f_2014_inbred_no_outliers.csv .csv
g2f_2014_inbred_raw.csv .csv
/z._2014_supplemental_info directory
g2f_2014_field_characteristics.csv .csv
2015 Field Season Phenotypic and Genotypic Data _readme.txt .txt CyVerse [10] (https://doi.org/10.7946/P24S31)
/a._2015_hybrid_phenotypic_data directory
_g2f_2015_hybrid_data_description.txt .txt
g2f_2015_hybrid_no_outliers.csv .csv
g2f_2015_hybrid_raw.csv .csv
/b._2015_gbs_data directory
_g2f_2014_gbs_data_description.txt .txt
/c._2015_weather_data directory
_g2f_2015_weather_data_description.txt .txt
g2f_2015_weather_calibrated.csv .csv
g2f_2015_weather_clean.csv .csv
/d._2015_inbred_phenotypic_data directory
_g2f_2015_inbred_data_description.txt .txt
g2f_2015_inbred_raw.csv directory
/e._2015_soils directory
_g2f_2015_soil_data.txt .txt
g2f_2015_soil_data.csv .csv
/z._2015_supplemental_info directory
_g2f_2015_supplemental_information.txt .txt
g2f_2015_cooperator_list.csv .csv
g2f_2015_field_irrigation.csv .csv
g2f_2015_field_metadata.csv .csv
2014 and 2015 Inbred Ear Imaging _readme.txt txt CyVerse [11] (https://doi.org/10.7946/P2C34P)
2014_2015_compiledData.tar.gz .tar.gz
2014_gxe_compiledDataAndFileNames.csv .csv
2014_gxe_compiledDataAndFileNames_Raw.csv .csv
2015_gxe_compiledDataAndFileNames.csv .csv
2015_gxe_compiledDataAndFileNames_Raw.csv .csv
CEK_Data_Files.tar.gz .tar.gz
/cob directory
_cob.txt txt
cob.tar.gz .tar.gz
cob_01of05.tar.gz .tar.gz
cob_02of05.tar.gz .tar.gz
cob_03of05.tar.gz .tar.gz
cob_04of05.tar.gz .tar.gz
cob_05of05.tar.gz .tar.gz
/ear directory
_ear.txt .txt
ear.tar.gz tar.gz
ear_01of08.tar.gz tar.gz
ear_02of08.tar.gz tar.gz
ear_03of08.tar.gz tar.gz
ear_04of08.tar.gz tar.gz
ear_05of08.tar.gz tar.gz
ear_06of08.tar.gz tar.gz
ear_07of08.tar.gz tar.gz
ear_08of08.tar.gz tar.gz
/kernel directory
_kernel.txt .txt
kernel.tar.gz tar.gz
kernel_01of05.tar.gz tar.gz
kernel_02of05.tar.gz tar.gz
kernel_03of05.tar.gz tar.gz
kernel_04of05.tar.gz tar.gz
kernel_05of05.tar.gz tar.gz