Table 1 Overview of data files and data sets
Label | Name of data file/data set | File types (extension) | Data repository and identifier |
|---|---|---|---|
DNA Sequences of Inbreds | GBS sequencing Maize G2F (G × E) inbreds | Sequence reads | NCBI SRA PRJNA385022 [3] (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA385022) |
2014 Field Season Phenotypic and Genotypic Data | _readme.txt | .txt | CyVerse [9] (https://doi.org/10.7946/P2V888) |
/a._2014_hybrid_phenotypic_data | directory | ||
_g2f_2014_hybrid_data_description.txt | .txt | ||
g2f_2014_hybrid_no_outliers.csv | .csv | ||
g2f_2014_hybrid_raw.csv | .csv | ||
/b._2014_gbs_data | directory | ||
_g2f_2014_gbs_data_description.txt | .txt | ||
g2f_2014_gbs_data.csv | .csv | ||
g2f_2014_zeagbsv27.imp.h5 | .h5 | ||
g2f_2014_zeagbsv27.imp.h5.gz | .gz | ||
g2f_2014_zeagbsv27.raw.h5 | .h5 | ||
g2f_2014_zeagbsv27.raw.h5.gz | .gz | ||
g2f_2014_zeagbsv27impv5hmp.txt.gz | .gz | ||
g2f_2014_zeagbsv27v5hmp.txt.gz | .gz | ||
/c._2014_weather_data | directory | ||
_g2f_2014_weather_data_description.txt | .txt | ||
g2f_2014_weather_calibrated.csv | .csv | ||
g2f_2014_weather_clean.csv | .csv | ||
/d._2014_inbred_phenotypic_data | directory | ||
_g2f_2014_inbred_data_description.txt | .txt | ||
g2f_2014_inbred_no_outliers.csv | .csv | ||
g2f_2014_inbred_raw.csv | .csv | ||
/z._2014_supplemental_info | directory | ||
g2f_2014_field_characteristics.csv | .csv | ||
2015 Field Season Phenotypic and Genotypic Data | _readme.txt | .txt | CyVerse [10] (https://doi.org/10.7946/P24S31) |
/a._2015_hybrid_phenotypic_data | directory | ||
_g2f_2015_hybrid_data_description.txt | .txt | ||
g2f_2015_hybrid_no_outliers.csv | .csv | ||
g2f_2015_hybrid_raw.csv | .csv | ||
/b._2015_gbs_data | directory | ||
_g2f_2014_gbs_data_description.txt | .txt | ||
/c._2015_weather_data | directory | ||
_g2f_2015_weather_data_description.txt | .txt | ||
g2f_2015_weather_calibrated.csv | .csv | ||
g2f_2015_weather_clean.csv | .csv | ||
/d._2015_inbred_phenotypic_data | directory | ||
_g2f_2015_inbred_data_description.txt | .txt | ||
g2f_2015_inbred_raw.csv | directory | ||
/e._2015_soils | directory | ||
_g2f_2015_soil_data.txt | .txt | ||
g2f_2015_soil_data.csv | .csv | ||
/z._2015_supplemental_info | directory | ||
_g2f_2015_supplemental_information.txt | .txt | ||
g2f_2015_cooperator_list.csv | .csv | ||
g2f_2015_field_irrigation.csv | .csv | ||
g2f_2015_field_metadata.csv | .csv | ||
2014 and 2015 Inbred Ear Imaging | _readme.txt | txt | CyVerse [11] (https://doi.org/10.7946/P2C34P) |
2014_2015_compiledData.tar.gz | .tar.gz | ||
2014_gxe_compiledDataAndFileNames.csv | .csv | ||
2014_gxe_compiledDataAndFileNames_Raw.csv | .csv | ||
2015_gxe_compiledDataAndFileNames.csv | .csv | ||
2015_gxe_compiledDataAndFileNames_Raw.csv | .csv | ||
CEK_Data_Files.tar.gz | .tar.gz | ||
/cob | directory | ||
_cob.txt | txt | ||
cob.tar.gz | .tar.gz | ||
cob_01of05.tar.gz | .tar.gz | ||
cob_02of05.tar.gz | .tar.gz | ||
cob_03of05.tar.gz | .tar.gz | ||
cob_04of05.tar.gz | .tar.gz | ||
cob_05of05.tar.gz | .tar.gz | ||
/ear | directory | ||
_ear.txt | .txt | ||
ear.tar.gz | tar.gz | ||
ear_01of08.tar.gz | tar.gz | ||
ear_02of08.tar.gz | tar.gz | ||
ear_03of08.tar.gz | tar.gz | ||
ear_04of08.tar.gz | tar.gz | ||
ear_05of08.tar.gz | tar.gz | ||
ear_06of08.tar.gz | tar.gz | ||
ear_07of08.tar.gz | tar.gz | ||
ear_08of08.tar.gz | tar.gz | ||
/kernel | directory | ||
_kernel.txt | .txt | ||
kernel.tar.gz | tar.gz | ||
kernel_01of05.tar.gz | tar.gz | ||
kernel_02of05.tar.gz | tar.gz | ||
kernel_03of05.tar.gz | tar.gz | ||
kernel_04of05.tar.gz | tar.gz | ||
kernel_05of05.tar.gz | tar.gz |