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Table 1 Number of reads from the different approaches

From: Comparing 16S rDNA amplicon sequencing and hybridization capture for pea aphid microbiota diversity analysis

Method

Raw reads

Reads after QC

Reads after chimera removal

Proportion of rRNA reads (%)

EM primers [9]

3086

3010

3000

100.00

NAR primers [10]

39,551

37,417

37,362

100.00

SHS capture

18,113

12,930

12,930

68.61