Table 1 EMBLmyGFF3 performance assessment on different genome annotations
From: EMBLmyGFF3: a converter facilitating genome annotation submission to European Nucleotide Archive
Species | File size of the genome (Mbases) | File size of the gff annotation file (Mbytes) | Memory usage (Gbytes) | Compute time (Min) |
|---|---|---|---|---|
E. coli | 4.6 | 3.5 | 0.17 | 2.2 |
C. intermedia | 13 | 3 | 0.14 | 1.8 |
T. terrestris | 36 | 17 | 0.40 | 10 |
E. subulatus | 227 | 63 | 1.60 | 49 |
O. niloticus | 927 | 122 | 3.11 | 164 |