TY - JOUR AU - Ravel, J. AU - Gajer, P. AU - Abdo, Z. AU - Schneider, G. M. AU - Koenig, S. S. AU - McCulle, S. L. PY - 2011 DA - 2011// TI - Vaginal microbiome of reproductive-age women JO - Proc Natl Acad Sci USA VL - 108 UR - https://doi.org/10.1073/pnas.1002611107 DO - 10.1073/pnas.1002611107 ID - Ravel2011 ER - TY - JOUR AU - Aagaard, K. AU - Riehle, K. AU - Ma, J. AU - Segata, N. AU - Mistretta, T. A. AU - Coarfa, C. PY - 2012 DA - 2012// TI - A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0036466 DO - 10.1371/journal.pone.0036466 ID - Aagaard2012 ER - TY - JOUR AU - Stout, M. AU - Zhou, Y. AU - Wylie, K. M. AU - Tarr, P. I. AU - Macones, G. A. AU - Tuuli, M. G. PY - 2017 DA - 2017// TI - Early pregnancy vaginal microbiome trends and preterm birth JO - Am J Obstet Gynecol VL - 217 UR - https://doi.org/10.1016/j.ajog.2017.05.030 DO - 10.1016/j.ajog.2017.05.030 ID - Stout2017 ER - TY - JOUR AU - DiGiulio, D. B. AU - Callahan, B. J. AU - McMurdie, P. J. AU - Costello, E. K. AU - Pyell, D. J. AU - Robaczewska, A. PY - 2015 DA - 2015// TI - Temporal and spatial variation of the human microbiota during pregnancy JO - PNAS VL - 112 UR - https://doi.org/10.1073/pnas.1502875112 DO - 10.1073/pnas.1502875112 ID - DiGiulio2015 ER - TY - JOUR AU - Fielder, R. L. AU - Carey, K. B. AU - Carey, M. P. PY - 2013 DA - 2013// TI - Acceptability of STI testing using self-collected vaginal swabs among college women JO - J Am College Health J ACH VL - 61 UR - https://doi.org/10.1080/07448481.2012.750610 DO - 10.1080/07448481.2012.750610 ID - Fielder2013 ER - TY - JOUR AU - Mercer, B. M. AU - Taylor, M. C. AU - Fricke, J. L. AU - Baselski, V. S. AU - Sibai, B. M. PY - 1995 DA - 1995// TI - The accuracy and patient preference for self-collected group B Streptococcus cultures JO - Am J Obstet Gynecol VL - 173 UR - https://doi.org/10.1016/0002-9378(95)91380-7 DO - 10.1016/0002-9378(95)91380-7 ID - Mercer1995 ER - TY - JOUR AU - Chernesky, M. A. AU - Hooke, E. W. AU - Martin, D. H. AU - Lane, J. AU - Johnson, R. AU - Jordan, J. A. PY - 2005 DA - 2005// TI - Women find it easy and prefer to collect their own vaginal swabs to diagnose Chlamydia trachomatis or Neisseria gonorrhoeae infections JO - Sex Transm Dis VL - 32 UR - https://doi.org/10.1097/01.olq.0000190057.61633.8d DO - 10.1097/01.olq.0000190057.61633.8d ID - Chernesky2005 ER - TY - JOUR AU - Forney, L. J. AU - Gajer, P. AU - Williams, C. J. AU - Schneider, G. M. AU - Koenig, S. S. AU - McCulle, S. L. PY - 2010 DA - 2010// TI - Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis JO - J Clin Microbiol VL - 48 UR - https://doi.org/10.1128/JCM.01710-09 DO - 10.1128/JCM.01710-09 ID - Forney2010 ER - TY - JOUR AU - Aagard, K. AU - Petrosino, J. AU - Keitel, W. AU - Watson, M. AU - Katancik, J. AU - Garcia, N. PY - 2013 DA - 2013// TI - The Human Microbiome Project strategy for comprehensive sampling of the human microbiome and why it matters JO - FASEB J VL - 27 UR - https://doi.org/10.1096/fj.12-220806 DO - 10.1096/fj.12-220806 ID - Aagard2013 ER - TY - JOUR PY - 2012 DA - 2012// TI - Structure, function and diversity of the healthy human microbiome JO - Nature VL - 486 UR - https://doi.org/10.1038/nature11234 DO - 10.1038/nature11234 ID - ref10 ER - TY - JOUR PY - 2012 DA - 2012// TI - Evaluation of 16S rDNA-based community profiling for human microbiome research JO - PLoS ONE VL - 7 UR - https://doi.org/10.1371/journal.pone.0039315 DO - 10.1371/journal.pone.0039315 ID - ref11 ER - TY - JOUR AU - Haas, B. J. AU - Gevers, D. AU - Earl, A. M. AU - Feldgarden, M. AU - Ward, D. V. AU - Giannoukos, G. PY - 2011 DA - 2011// TI - Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR Amplicons JO - Genome Res VL - 21 UR - https://doi.org/10.1101/gr.112730.110 DO - 10.1101/gr.112730.110 ID - Haas2011 ER - TY - JOUR AU - Wang, Q. AU - Garrity, G. M. AU - Tiedje, J. M. AU - Cole, J. R. PY - 2007 DA - 2007// TI - Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy JO - Appl Environ Microbiol VL - 73 UR - https://doi.org/10.1128/AEM.00062-07 DO - 10.1128/AEM.00062-07 ID - Wang2007 ER - TY - STD TI - Oksanen J, Blanchet FG, Friendly M, Kindt R, Legendre P, McGlinn D, et al. Vegan: community ecology package. Version 2.3-3. CRAN-The Comprehensive R Archive Network; 2016. https://CRAN.R-project.org/package=vegan, https://github.com/vegandevs/vegan. Accessed 4 Oct 2018. UR - https://github.com/vegandevs/vegan ID - ref14 ER - TY - STD TI - Roberts DW. labdsv: ordination and multivariate analysis for ecology. R package version 1.8-0; 2016. https://cran.r-project.org/package=labdsv. Accessed 4 Oct 2018. UR - https://cran.r-project.org/package%3dlabdsv ID - ref15 ER - TY - STD TI - Sievert C, Parmer C, Hocking T, Chamberlain S, Ram K, Corvellec M, et al. Plotly: create interactive web graphics via ‘plotly.js’. R package. version 4.7.1; 2017. https://CRAN.R-project.org/package=plotly. Accessed 4 Oct 2018. UR - https://CRAN.R-project.org/package%3dplotly ID - ref16 ER - TY - JOUR AU - Segata, N. AU - Izard, J. AU - Waldron, L. AU - Gevers, D. AU - Miropolsky, L. AU - Garrett, W. S. PY - 2011 DA - 2011// TI - Metagenomic biomarker discovery and explanation JO - Genome Biol VL - 12 UR - https://doi.org/10.1186/gb-2011-12-6-r60 DO - 10.1186/gb-2011-12-6-r60 ID - Segata2011 ER - TY - JOUR AU - Morgan, D. J. AU - Aboud, C. J. AU - McCaffrey, I. M. AU - Bhide, S. A. AU - Lamont, R. F. AU - Taylor-Robinson, D. PY - 1996 DA - 1996// TI - Comparison of Gram-stained smears prepared from blind vaginal swabs with those obtained at speculum examination for the assessment of vaginal flora JO - Br J Obstet Gynaecol VL - 103 UR - https://doi.org/10.1111/j.1471-0528.1996.tb09591.x DO - 10.1111/j.1471-0528.1996.tb09591.x ID - Morgan1996 ER - TY - JOUR AU - Stewart, C. M. W. AU - Schoeman, S. A. AU - Booth, R. A. AU - Smith, S. D. AU - Wilcox, M. H. AU - Wilson, J. D. PY - 2012 DA - 2012// TI - Assessment of self taken swabs versus clinician taken swab cultures for diagnosing gonorrhoea in women: single centre, diagnostic accuracy study JO - BMJ VL - 345 UR - https://doi.org/10.1136/bmj.e8107 DO - 10.1136/bmj.e8107 ID - Stewart2012 ER - TY - JOUR AU - Labani, S. AU - Asthana, S. PY - 2014 DA - 2014// TI - Human papillomavirus viral load on care HPV testing of self-collected vaginal samples vs. clinician-collected cervical samples JO - Eur J Obstet Gynecol Reprod Biol VL - 181 UR - https://doi.org/10.1016/j.ejogrb.2014.08.005 DO - 10.1016/j.ejogrb.2014.08.005 ID - Labani2014 ER - TY - JOUR AU - Wijgert, J. AU - Altini, L. AU - Jones, H. AU - Kock, A. AU - Young, T. AU - Williamson, A. L. AU - Hoosen, A. PY - 2006 DA - 2006// TI - Two methods of self-sampling compared to clinician sampling to detect reproductive tract infections in Gugulethu, South Africa JO - Sex Transm Dis. VL - 33 UR - https://doi.org/10.1097/01.olq.0000204671.62529.1f DO - 10.1097/01.olq.0000204671.62529.1f ID - Wijgert2006 ER - TY - JOUR AU - Kim, T. K. AU - Thomas, S. M. AU - Ho, M. PY - 2009 DA - 2009// TI - Heterogeneity of vaginal microbial communities within individuals JO - J Clin Microbiol VL - 47 UR - https://doi.org/10.1128/JCM.00854-08 DO - 10.1128/JCM.00854-08 ID - Kim2009 ER - TY - JOUR AU - Hay, P. E. AU - Ugwumadu, A. AU - Chowns, J. PY - 1997 DA - 1997// TI - Sex, thrush, and bacterial vaginosis JO - Int J STD AIDS VL - 8 UR - https://doi.org/10.1258/0956462971918850 DO - 10.1258/0956462971918850 ID - Hay1997 ER - TY - JOUR AU - Keane, F. E. AU - Ison, C. A. AU - Taylor-Robinson, D. PY - 1997 DA - 1997// TI - A longitudinal study of the vaginal flora over a menstrual cycle JO - Int J STD AIDS VL - 8 UR - https://doi.org/10.1258/0956462971920631 DO - 10.1258/0956462971920631 ID - Keane1997 ER - TY - JOUR AU - Schwebke, J. R. AU - Richey, C. M. AU - Weiss, H. L. PY - 1999 DA - 1999// TI - Correlation of behaviors with microbiological changes in vaginal flora JO - J Infect Dis VL - 180 UR - https://doi.org/10.1086/315065 DO - 10.1086/315065 ID - Schwebke1999 ER -