Skip to main content

Advertisement

Table 1 Designation of the Corynebacterium diphtheriae isolate used in the analysis in this study

From: A SNP-based phylogenetic analysis of Corynebacterium diphtheriae in Malaysia

No. Culture no./collection no Year of collection Origin of strain GenBank assembly id.
1 C111 1986 Malaysia GCA_002115305.1
2 C110 1986 Malaysia GCA_001832975.1
3 C113 1986 Malaysia GCA_002115335.1
4 C122 1987 Malaysia GCA_001832945.1
5 C123 1987 Malaysia GCA_001832925.1
6 C198 n/a Malaysia GCA_002213115.1
7 C325 2003 Malaysia GCA_001832935.1
8 C488 2008 Malaysia GCA_001833005.2
9 C517 2010 Malaysia GCA_001833025.1
10 RZ252 2016 Malaysia GCA_001889785.1
11 RZ319 2016 Malaysia GCA_001889845.1
12 RZ356 2016 Malaysia GCA_001889775.1
13 RZ358 2016 Malaysia GCA_001889855.1
14 RZ373 2016 Malaysia GCA_001889825.1
15 RZ378 2016 Malaysia GCA_001889835.1
16 RZ379 2016 Malaysia GCA_001889765.1
17 C319 2001 Malaysia GCA_002115215.1
18 C324 2003 Malaysia GCA_002115285.1
19 C326 2003 Malaysia GCA_002213075.1
20 RZ553 2016 Malaysia GCA_002115325.1
21 RZ597 2016 Malaysia GCA_002115185.1
22 RZ600 2016 Malaysia GCA_002115155.1
23 RZ632 2016 Malaysia GCA_002115145.1
24 RZ656 2016 Malaysia GCA_002115125.1
25 RZ658 2016 Malaysia GCA_002115085.1
26 RZ659 2016 Malaysia GCA_002213145.1
27 RZ693 2016 Malaysia GCA_002115095.1
28 TH1526 2016 India GCA_001723445.1
29 TH510 2016 India GCA_001723465.1
30 TH1141 2016 India GCA_001723455.1
31 TH2031 2016 India GCA_001742095.1
32 TH1337 2016 India GCA_001742085.1
33 PW8 1896 USA CP003216.1
34 NCTC13129 1997 UK BX248353.1
35 C7β tox+ 1954 CP003210.1
36 CDCE8392 CP003211.1
37 CD31A 1978 Brazil CP003206.1
38 CD176 1996 Belarus GCA_002203315.1
39 CD72 1996 Belarus GCA_002202335.1
40 CD847 1997 Belarus GCA_002203335.1
41 CD1360 1999 Belarus GCA_002202495.1
42 CD2929 2004 Belarus GCA_002202605.1
43 CD5052 2010 Belarus GCA_002203535.1
44 CD4568 2007 Belarus GCA_002202925.1
45 CD4728 2007 Belarus GCA_002203055.1
46 CD1791 2000 Belarus GCA_002203155.1
47 CD2173 2001 Belarus GCA_002203895.1
48 CD2225 2001 Belarus GCA_002203905.1
49 ST378-KZN-2015-45464 2015 Africa GCA_001875925.1
50 ST378-KZN-2015-45465 2015 Africa GCA_001875945.1
51 ST378-KZN-2015-45786 2015 Africa GCA_001875965.1
52 ST378-KZN-2016-48412 2016 Africa GCA_001876295.1
53 ST378-KZN-2015-45902 2015 Africa GCA_001876245.1
54 ST378-KZN-2015-45903 2015 Africa GCA_001876165.1
55 CD50 1996 Belarus GCA_002201145.1
56 CD1050 1998 Belarus GCA_002201165.1
57 NCTC5011 # 1932 UK GCA_000263415.1
58 NC03529 # 1931 UK GCA_000257885.1
59 VA01* 1999 Brazil CP003217.1
60 CD241* 1981 Brazil CP003207.1
61 INCA402* 2000 Brazil CP003208.1
62 HC01* 1993 Brazil CP003212.1
63 HC02* 1999 Brazil CP003213.1
64 HC03* 2000 Brazil CP003214.1
65 HC04* 2003 Brazil CP003215.1
66 HC07* 2013 Brazil GCA_000953975.1
67 BH8* Brazil CP003209.1
68 Aberdeen* 2009 UK GCA_000455805.1
69 ISS3319* Italy CP025209.1
70 ISS4060* 1999 Italy GCA_001026805.1
71 NCTC11397* 1969 USA LN831026.1
72 ISS4746* 2000 Italy GCA_001026845.1
73 ISS4749* 2000 Italy GCA_001188005.1
74 RZ523* 2016 Malaysia GCA_002115225.1
75 CD4010* 2004 Belarus GCA_002202815.1
76 CD4288* 2006 Belarus GCA_002203015.1
77 CD4502* 2006 Belarus GCA_002203705.1
78 ST395-KZN-2015-45784* 2015 Africa GCA_001876175.1
79 ST402-SA-1980-2337* 1980 Africa GCA_001876285.1
80 CD4461* 2006 Belarus GCA_002201075.1
  1. * Non-toxin bearing Corynebacterium diphtheriae
  2. #Corynebacterium diphtheriae isolate before mass vaccination