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Fig. 1 | BMC Research Notes

Fig. 1

From: Isolation and characterization of camelid single-domain antibodies against HER2

Fig. 1

Characterization of anti-HER2 llama VHHs. a Size exclusion chromatography profiles of anti-HER2 VHHs. Approximately 0.5 mg of each VHH was injected over a Superdex™ 75 GL column (GE Healthcare) connected to an ÄKTA FPLC protein purification system (GE Healthcare) in a mobile phase consisting of HBS-EP + (10 mM HEPES, pH 7.4, containing 150 mM NaCl, 3 mM EDTA and 0.05% surfactant P20). Maximum A280 values were normalized to 100 for each VHH. b Single-cycle kinetic analysis of VHHs binding to human HER2 by SPR. All VHHs were purified by preparative size exclusion chromatography prior to analysis. Approximately 1323 response units (RUs) of human HER2 were immobilized on adjacent flow cells of a CM5 Series S sensor chip in 10 mM acetate, pH 4.0, using an amine coupling kit (GE Healthcare). An ethanolamine-blocked flow cell served as the reference. Monomeric VHHs at concentrations ranging from 1–400 nM were injected over the surfaces in HBS-EP+ buffer at a flow rate of 40 µL min−1. The contact time was 120 s and the dissociation time was 600 s. The surfaces were regenerated using 10 mM glycine, pH 1.5. Data were analyzed using Biacore T200 Software v3.0 (GE Healthcare) and fitted to a 1:1 binding model (black lines show data and red lines show fits). Affinity and kinetic parameters (25 °C) are shown in Table 1, and sensorgrams showing binding to cynomolgus and murine HER2 are shown in Additional file 2. c Binding of VHHs to HER2+ SKOV3 cells by flow cytometry. SKOV3 cells were grown to 70–80% confluency at 37 °C in a humidified 5% CO2 atmosphere in RPMI-1640 medium supplemented with 10% fetal bovine serum, 100 U mL−1 penicillin, 100 µg mL−1 streptomycin and 250 ng mL−1 amphotericin B. Cells were dissociated from flasks using Accutase® solution, washed in PBS and then resuspended in PBS containing 1% bovine serum albumin. Approximately 1 × 105 cells were stained sequentially on ice for 30 min with: (i) 10 µg mL−1 of each VHH, (ii) 5 µg mL−1 of mouse anti-c-Myc IgG (clone 9E10), and (iii) 5 µg mL−1 of APC-conjugated goat anti-mouse IgG (Thermo-Fisher). The cells were washed with PBS in between each staining step, and after the final wash, data (10,000 events) were acquired on a BD FACSCanto™ instrument (BD Biosciences, San Jose, CA). d Summary of epitope binning of anti-HER2 VHHs by SPR. HER2 was immobilized as described in B. In the first injection, each VHH at a concentration equivalent to 20 × KD or trastuzumab (20 nM) was injected at a flow rate of 20 µL s−1 for 300 s contact time to saturate the HER2 surface. The second injection consisted of the same VHH along with a second VHH (both at 20 × their respective KDs). All co injection experiments were performed in both orientations. Blue circles represent distinct epitopes conserved between human and cynomolgus HER2, and green circle represents a distinct epitope conserved across human, cynomolgus and mouse HER2

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