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Table 1 Analyses of candidate reference genes by BestKeeper, GeNorm and NormFinder algorithms

From: Reference genes for gene expression studies targeting sugarcane infected with Sugarcane mosaic virus (SCMV)

BestKeepera

       

Gene rankingb

SAND

UK

GAPDH

UBC18

RPL1

UBQ1

ACT

N

24

24

24

24

24

24

24

SD [± CP]

0.21

0.25

0.28

0.38

0.59

1.02

1.04

CV [% CP]

0.72

0.97

1.18

1.28

1.98

2.99

3.24

BestKeeperc

       

Gene rankingb

SAND

UK

GAPDH

UBC18

RPL1

UBQ1

ACT

UK

0.456

 

0.025

GAPDH

− 0.563

− 0.611

 

0.004

0.002

UBC18

0.473

0.690

− 0.367

 

0.019

0.001

0.078

RPL1

0.259

0.163

− 0.393

0.320

 

0.221

0.444

0.058

0.128

UBQ1

0.151

− 0.126

0.036

− 0.232

− 0.345

 

0.479

0.555

0.867

0.275

0.099

ACT

− 0.330

− 0.419

0.781

− 0.353

− 0.773

0.419

 

0.115

0.041

0.001

0.091

0.001

0.041

Coeff. of corr. [r]d

0.211

− 0.004

0.365

0.130

− 0.299

0.760

0.636

P-value

0.323

0.984

0.079

0.542

0.156

0.001

0.001

BestKeepere

SAND

UK

 

UBC18

   

Coeff. of corr. [r]

0.705

0.867

 

0.910

   

P-value

0.001

0.001

 

0.001

   

GeNorm

       

Gene rankingb

UBC18

UK

SAND

GAPDH

RPL1

UBQ1

ACT

Stablity (M)

0.224

0.224

0.276

0.578

0.691

1.296

1.343

NormFinder

       

Gene rankingb

SAND

UK

GAPDH

UBC18

RPL1

UBQ1

ACT

Stability

0.227

0.274

0.279

0.381

0.539

0.677

0.709

Best gene combination of two genes

SAND

 

GAPDH

    

Stability

0.181

 

0.181

    
  1. aBestKeeper SD statistics of all seven candidate reference genes
  2. bRanking from the most to the least stable gene (left to right)
  3. cRepeated pair-wise correlation analysis among candidate reference genes
  4. dCoefficient of correlation with the BestKeeper index
  5. eCoefficient of correlation with the BestKeeper index after the exclusion of candidate reference genes with standard dev (SD) above 1.0 and with low Pearson correlation (r) values