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Table 1 Summary details for 17 microsatellite loci developed for Mobula alfredi

From: Development and characterization of 17 polymorphic microsatellite markers for the reef manta ray (Mobula alfredi)

Locus

NCBI reference

Repeat motif

Primer sequence (5′-3′)

Fluoro label

n

A

Observed allele size range (bp)

HO

HE

P HWE

MAQDD04

MK225654

GAA(27)

F: ACATCCTGCAGAGGCTGTAA

R: TCCTTATCTTGTTCCGGCAG

VIC

60

10

363–393

0.88

0.82

0.71

MAQDD09

MK225655

TG(15)

F: CGTCGACTGTTCACACTTCC

R: CTTCCTGGCTGGTAGGTACG

FAM

60

5

190–206

0.62

0.59

0.59

MAQDD11

MK225656

TC(19)

F: TTTACCTATAGATGGGTCAGGGAC

R: GCAGATCGCTGTAGCTGTGA

NED

60

8

204–224

0.92

0.85

0.07

MAQDD12

MK225657

AC(19)

F: AAAGGATCTGGGAATACGGG

R: GTGTTGGGATCTCTGGTGCT

FAM

60

4

149–155

0.32

0.36

0.48

MAQDD18

MK225658

TG(13)

F: GGGAGACATTGAAACGTGTG

R: GAATGTGATGGAGAGCACTTG

FAM

60

3

137–149

0.30

0.38

0.11

MAQDD21

MK225659

TG(13)

F: GGCATACAAAGTGCTGGAGG

R: ATCTCAACCCTGCGTGGAC

NED

60

13

270–314

0.65

0.69

0.24

MAQDD22

MK225660

AC(17)

F: CGGAATAGCTGACCCTCAGA

R: ATTGTGATGGAGTGGTCCGT

FAM

60

3

134–138

0.68

0.55

0.18

MAQDD23

MK225661

AC(10)

F: CCCATCACTGATAATGAGCGT

R: GTGCAGTCAAAGGAATGGGT

FAM

60

2

148–150

0.35

0.50

0.02

MAQDD26

MK225662

AC(16)

F: ATGTCAACCGGACTGGAAAT

R: TGTATGCGTATCTAGCATCTTCA

PET

60

6

203–33

0.62

0.59

0.08

MAQDD28

MK225663

AC(23)

F: GCTGCAGGGAAGAAGCTAAA

R: TTTGTCCGAATATCTTGCCA

NED

60

6

151–165

0.58

0.55

0.95

MAQDD29

MK225664

GT(21)

F: GCTGAGAGGAAGCTATTGGC

R: GAAGATACAGGAAGATAAATTGGCA

FAM

60

8

193–213

0.63

0.60

0.90

MAQDD31

MK225665

AC(20)

F: AACTGCCCATTCACATTTCC

R: CCCATAGCTACCATCAGGGA

PET

60

13

282–314

0.72

0.72

0.34

MAQDD33

MK225666

CA(21)

F: GACGAGACATCCCAAACACC

R: TTTCCTGGATCCACAACCTC

FAM

60

7

200–228

0.65

0.59

0.31

MAQDD37

MK225667

GT(14)

F: CGTTGCATCCATCTGACGTA

R: GATGCACCAGAGCAACCAC

PET

60

4

170–192

0.58

0.51

0.36

MAQDD38

MK225668

CA(14)

F: CCAAACATAACCCAGGCAAG

R: CAGCCTTGGTGAACTGAGTG

VIC

60

5

156–172

0.65

0.68

0.96

MAQDD39

MK225669

GT(14)

F: AGCAGCTCTGTGGAAGCAGT

R: GCACCCATTTCCAATCAGTT

FAM

60

2

360–362

0.65

0.50

0.04

MAQDD43

MK225670

AC(14)

F: TCCCTGGCTGTATTGCCTAC

R: AACCCTCGGATATCCATTCTC

NED

60

7

162–184

0.80

0.73

0.55

  1. NCBI National Center for Biotechnology Information GenBank Reference; Primer Sequence F forward, R reverse (All forward primers had a GTT on the 3′ end & all reverse primers had CAG tag on the 5′ end (not included here), n is the number of individuals genotyped, A is the number of alleles observed, HO is the observed heterozygosity, HE is the expected heterozygosity, PHWE is the probability of the locus deviating from Hardy–Weinberg equilibrium