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Table 1 Overview of data files

From: Transcriptomics data of 11 species of yeast identically grown in rich media and oxidative stress conditions

Label

Name of data file/data set

File types (file extension)

Data repository and identifier (DOI or accession number)

S. cerevisiae rich medium RNA-seq

SRR8690267_1.fastq; SRR8690267_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690267

S. paradoxus rich medium RNA-seq

SRR8690268_1.fastq; SRR8690268_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690268

S. mikatae rich medium RNA-seq

SRR8690269_1.fastq; SRR8690269_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690269

S. kudriavzevii rich medium RNA-seq

SRR8690270_1.fastq; SRR8690270_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690270

S. bayanus rich medium RNA-seq

SRR8690271_1.fastq; SRR8690271_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690271

N. castelii rich medium RNA-seq

SRR8690272_1.fastq; SRR8690272_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690272

K. lactis rich medium RNA-seq

SRR8690273_1.fastq; SRR8690273_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690273

L. waltii rich medium RNA-seq

SRR8690274_1.fastq; SRR8690274_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690274

L. waltii replicate 2 rich medium RNA-seq

SRR8690275_1.fastq; SRR8690275_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690275

L. thermotolerans rich medium RNA-seq

SRR8690276_1.fastq; SRR8690276_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690276

L. kluyveri rich medium RNA-seq

SRR8690261_1.fastq; SRR8690261_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690261

Schizo. pombe rich medium RNA-seq

SRR8690262_1.fastq; SRR8690262_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690262

S. cerevisiae oxidative stress RNA-seq

SRR8690267_1.fastq; SRR8690267_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690267

S. paradoxus oxidative stress RNA-seq

SRR8690268_1.fastq; SRR8690268_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690268

S. mikatae oxidative stress RNA-seq

SRR8690257_1.fastq; SRR8690257_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690257

S. kudriavzevii oxidative stress RNA-seq

SRR8690258_1.fastq; SRR8690258_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690258

S. bayanus oxidative stress RNA-seq

SRR8690259_1.fastq; SRR8690259_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690259

N. castelii oxidative stress RNA-seq

SRR8690260_1.fastq; SRR8690260_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690260

K. lactis oxidative stress RNA-seq

SRR8690265_1.fastq; SRR8690265_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690265

L. waltii oxidative stress RNA-seq

SRR8690266_1.fastq; SRR8690266_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690266

L. waltii replicate 2 oxidative stress RNA-seq

SRR8690278_1.fastq; SRR8690278_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690278

L. thermotolerans oxidative stress RNA-seq

SRR8690277_1.fastq; SRR8690277_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690277

L. kluyveri oxidative stress RNA-seq

SRR8690280_1.fastq; SRR8690280_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690280

Schizo. pombe oxidative stress RNA-seq

SRR8690279_1.fastq; SRR8690279_2.fastq

.fastq

https://identifiers.org/ncbi/insdc.sra:SRR8690279

S. cerevisiae transcriptome assembly

s_cerevisiae_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

S. paradoxus transcriptome assembly

s_paradoxus_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

S. mikatae transcriptome assembly

s_mikatae_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

S. kudriavzevii transcriptome assembly

s_kudriavzevii_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

S. bayanus rich medium RNA-seq

s_bayanus_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

N. castelii transcriptome assembly

n_castellii_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

K. lactis transcriptome assembly

k_lactis_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

L. waltii transcriptome assembly

l_waltii_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

L. waltii replicate 2 transcriptome assembly

l_waltii_rep2_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

L. thermotolerans transcriptome assembly

l_thermotolerans_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

L. kluyveri transcriptome assembly

l_kluyveri_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

Schizo. pombe transcriptome assembly

schizo_pombe_annotations_with_novel.gff

.gff

https://doi.org/10.6084/m9.figshare.7851521.v2

Sources of yeast strains and reference genomes

Yeast_strain_source.pdf

.pdf

https://doi.org/10.6084/m9.figshare.7851521.v2

  1. The raw RNA-Seq data (.fastq files) are available for download on the SRA [7], and the transcriptome assembly annotations (.gff files), consisting of novel transcripts combined with the reference annotations for each species, are available on Figshare [8] as well as a table with the information about the source of each strain and reference genome